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The map label for this gene is oppC [H]

Identifier: 28378029

GI number: 28378029

Start: 1149211

End: 1150245

Strand: Direct

Name: oppC [H]

Synonym: lp_1263

Alternate gene names: 28378029

Gene position: 1149211-1150245 (Clockwise)

Preceding gene: 28378028

Following gene: 28378030

Centisome position: 34.74

GC content: 48.5

Gene sequence:

>1035_bases
ATGGCAGAAAATCCAAGTAGTATCGATATTAAGCCCGGCGACTTCGAGCCGTTAGATAAACAAGCGGGTCCTGATAATGA
ACGGATCGCAGCACCTTCCTTAACGTTCGGCCAAGATGTATGGCGGCGATTGAAGTCTAACAAGACCGCTTTTATCAGCT
TTATCGTGTTAGTATTCTTATTCTTAGTGGCATTTGGTGGACGGGCAGTCTACCATGTTGATCCTAATGCACAGTCGCCA
CGGTATGCGAACCTCCCTCCGAAGATTCCGGGTGTTAGTATCCATGGCTTGAATGGTCACTTGACTCAATCTGGTAAGGA
CGTTGATGCGTATGCGGCGGCCGGTGCAAAGTCTGACGTACATTATCTTCTCGGGACTGATTATCTGGGCCGGGACTTAC
TGGCGCGGATTATGTATGGGACCCGGATCTCACTTGAAATTGCGTTGATTGCTACTTTGATTGACCTGACGATTGGGGTC
GGATTCGGGATACTCTCCGGTTGGAAAGGTGGGCGCGTTGATTTATTCATGCAACGTGTGATTGAAATCCTCTCGTCCAT
CCCACAATTGGTTATCATGGTGTTGATGGCCACGGCCTTCACGAAGACTGGGATGGCCTCAATCATTGCGGCCATCGCGA
TCACTGGTTGGACCACGATGGCCCGGCTGACTCGGGCACAGACCTTGCAATTGAAGAACCAAGATTTTATTTTGGCTGCG
CGGACACTGGGTGAATCACCCGTCAAGATTGCTTGGAAACACTTGTTACCAAACCTTTCAAGTGTCATTATTATTCAAAC
GATGTTCACGATTCCAAGTGCGATCTTCTTCGAAGCGTTCTTGAGTTATATCGGGATTGGGATCAGTTCACCACAAGCTT
CATTGGGGACGTTGATCTCTGATGGGCAGAAGAACTTCCAATTCTTGCCATATCAGATGTGGTACCCAGCCATCGTGCTG
ATCATCTTGATGCTCGCCTTTAACTTGTTAGGTGACGGGATGCGCGATGCGTTTGATCCAAAGTCAAAACGTTAG

Upstream 100 bases:

>100_bases
TTTCTATTCAGCACTCCTTTGCTTACTATTATTGTTGACCGATATTGTCTACGGAATTATTGATCCGCGGATTCGTTTAA
ATGGAAATGGGGACTAGTTA

Downstream 100 bases:

>100_bases
GAGGACGGCAGCACTATGGAAAAACCAGAAAATGTGATTGAGGTCCGCAACTTGGAAATCAATTTCCATACTTATGCGGG
CGAAGTTAAAGCCATCCGTG

Product: oligopeptide ABC transporter, permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MAENPSSIDIKPGDFEPLDKQAGPDNERIAAPSLTFGQDVWRRLKSNKTAFISFIVLVFLFLVAFGGRAVYHVDPNAQSP
RYANLPPKIPGVSIHGLNGHLTQSGKDVDAYAAAGAKSDVHYLLGTDYLGRDLLARIMYGTRISLEIALIATLIDLTIGV
GFGILSGWKGGRVDLFMQRVIEILSSIPQLVIMVLMATAFTKTGMASIIAAIAITGWTTMARLTRAQTLQLKNQDFILAA
RTLGESPVKIAWKHLLPNLSSVIIIQTMFTIPSAIFFEAFLSYIGIGISSPQASLGTLISDGQKNFQFLPYQMWYPAIVL
IILMLAFNLLGDGMRDAFDPKSKR

Sequences:

>Translated_344_residues
MAENPSSIDIKPGDFEPLDKQAGPDNERIAAPSLTFGQDVWRRLKSNKTAFISFIVLVFLFLVAFGGRAVYHVDPNAQSP
RYANLPPKIPGVSIHGLNGHLTQSGKDVDAYAAAGAKSDVHYLLGTDYLGRDLLARIMYGTRISLEIALIATLIDLTIGV
GFGILSGWKGGRVDLFMQRVIEILSSIPQLVIMVLMATAFTKTGMASIIAAIAITGWTTMARLTRAQTLQLKNQDFILAA
RTLGESPVKIAWKHLLPNLSSVIIIQTMFTIPSAIFFEAFLSYIGIGISSPQASLGTLISDGQKNFQFLPYQMWYPAIVL
IILMLAFNLLGDGMRDAFDPKSKR
>Mature_343_residues
AENPSSIDIKPGDFEPLDKQAGPDNERIAAPSLTFGQDVWRRLKSNKTAFISFIVLVFLFLVAFGGRAVYHVDPNAQSPR
YANLPPKIPGVSIHGLNGHLTQSGKDVDAYAAAGAKSDVHYLLGTDYLGRDLLARIMYGTRISLEIALIATLIDLTIGVG
FGILSGWKGGRVDLFMQRVIEILSSIPQLVIMVLMATAFTKTGMASIIAAIAITGWTTMARLTRAQTLQLKNQDFILAAR
TLGESPVKIAWKHLLPNLSSVIIIQTMFTIPSAIFFEAFLSYIGIGISSPQASLGTLISDGQKNFQFLPYQMWYPAIVLI
ILMLAFNLLGDGMRDAFDPKSKR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=318, Percent_Identity=34.5911949685535, Blast_Score=168, Evalue=5e-43,
Organism=Escherichia coli, GI1787054, Length=327, Percent_Identity=30.2752293577982, Blast_Score=147, Evalue=1e-36,
Organism=Escherichia coli, GI1789889, Length=223, Percent_Identity=33.6322869955157, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787760, Length=306, Percent_Identity=31.0457516339869, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788505, Length=218, Percent_Identity=36.2385321100917, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1789964, Length=322, Percent_Identity=30.4347826086957, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787549, Length=302, Percent_Identity=25.1655629139073, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37578; Mature: 37446

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENPSSIDIKPGDFEPLDKQAGPDNERIAAPSLTFGQDVWRRLKSNKTAFISFIVLVFL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
FLVAFGGRAVYHVDPNAQSPRYANLPPKIPGVSIHGLNGHLTQSGKDVDAYAAAGAKSDV
HHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCC
HYLLGTDYLGRDLLARIMYGTRISLEIALIATLIDLTIGVGFGILSGWKGGRVDLFMQRV
CCEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IEILSSIPQLVIMVLMATAFTKTGMASIIAAIAITGWTTMARLTRAQTLQLKNQDFILAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEE
RTLGESPVKIAWKHLLPNLSSVIIIQTMFTIPSAIFFEAFLSYIGIGISSPQASLGTLIS
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DGQKNFQFLPYQMWYPAIVLIILMLAFNLLGDGMRDAFDPKSKR
CCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC
>Mature Secondary Structure 
AENPSSIDIKPGDFEPLDKQAGPDNERIAAPSLTFGQDVWRRLKSNKTAFISFIVLVFL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
FLVAFGGRAVYHVDPNAQSPRYANLPPKIPGVSIHGLNGHLTQSGKDVDAYAAAGAKSDV
HHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCCCC
HYLLGTDYLGRDLLARIMYGTRISLEIALIATLIDLTIGVGFGILSGWKGGRVDLFMQRV
CCEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
IEILSSIPQLVIMVLMATAFTKTGMASIIAAIAITGWTTMARLTRAQTLQLKNQDFILAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEE
RTLGESPVKIAWKHLLPNLSSVIIIQTMFTIPSAIFFEAFLSYIGIGISSPQASLGTLIS
HHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DGQKNFQFLPYQMWYPAIVLIILMLAFNLLGDGMRDAFDPKSKR
CCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377; 3145906 [H]