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The map label for this gene is citF [H]

Identifier: 28377897

GI number: 28377897

Start: 1006623

End: 1008161

Strand: Direct

Name: citF [H]

Synonym: lp_1109

Alternate gene names: 28377897

Gene position: 1006623-1008161 (Clockwise)

Preceding gene: 28377896

Following gene: 28377898

Centisome position: 30.43

GC content: 47.04

Gene sequence:

>1539_bases
TTGAAAAATAGTGTAGACCGCGAATTACCAGCAGAATTAATGACGAAGTTAAATTACCAAGGTTTTGAGTCAACCGAAAT
CGGACATCCTGAAATTCAACGGGTGGCCCCCAAAGTTCACGTTTCAACAGGGGACAACAAAGTCGTTGATTCCGTTGCTG
ACGTGGTAAAAGCCACTGTCAAAGATGGTATGACGATTTCATTTCACCACCATTTTCGTAATGGGGATTTCGTCTTCAAT
CAAGTGATGCGGGCCATTATTGATGCCGGTATTAAAGATTTGACCTTGGCGCCATCCTCCTTAACGGGCGTGATGAACGA
TATGGTGATCGAAGCAATTAAGGCCGGAACGATTACGAATATTACTAGCTCGGGGATGCGGGGCTCTCTTGGGGACTTCG
TTTCACACGGTGGTTTAAAGAACCCCGTAATCTTCCGTTCTCATGGTAATCGGGCCCGGGCCATTGAACATGGTGATATT
AAAATTGATGTCGCCTTTCTAGGTGTGCCGAATGCTGACCGACTAGGAAATGCGAACGGGATGGCTGGTAAAGCAGTCTT
TGGTTCCTTAGGTTACGCCCTGATGGATGCGCAATACGCCAACCAAGTTGTCTTATTGACCGATAATATTGTGGCTTATC
CAAATACACCGGCCTCAATTAAACAGACACAAGTCGATTACGTCGTGCAAGTCGACCAAGTTGGTGACCCTGACAAGATT
GGTTCAGGTGCGACGCGCTTCACCAAGGACCCAAAGGAATTGAAGATTGCCCAGACCGTTAATAATGTGATCGTGAACTC
ACCATACTTTAAAAACGGCTTCTCATTCCAAACTGGTTCCGGCGGTGCTGCGTTAGCTGTCACTCGGTACTTGCGGCAAG
CAATGCTCGATAATCAAATCAAAGCATCGTTTGCACTTGGTGGTATTACGAAACCAACCACTGATTTGCTCGAAGAAGGG
TTAGTTGATAAAGTCATGGATGTTCAAGACTTTGACAAAGGGGCGGCAGCATCGATGCACGCCAATCCTAATCAACAAGA
AATTGACGCATCATGGTACGCTGACCCTGATAATAAAGGAGCGATGGTTGATCAATTGGATGTTGCCATTCTGAGTGCGT
TGGAAATTGATACGCACTTCAATGTCAACGTCATGTCCGGTTCGGATGGCGTGATTCGTGGCGCCATTGGTGGACATCAA
GACGCGGCTACGGCCAAACTGACCATTATCTCTGCACCACTTGTCCGTGGTCGGTTAGCGACGATTGTGCCAGAAGTAAC
AACCGTTGTAACGCCGGGGGACTCCATTGACGTTGTTGTGACGGAATACGGGATTGCAATCAACCCCCGGCGTCAAGACC
TAGTTAAAGCACTCAGTCATGTCCCAGGTGTGCCGGTCTATATGATTGAAGAATTACAACAATTAGCCGAAAAGAAAGTC
GGCCAACCCCAACCACTTGAATTTACAGATCGCACCGTTGCCTTGATTGAATATCGCGATGGCACGATTATTGATACGAT
TAAAGCGGTGAAGGACTAA

Upstream 100 bases:

>100_bases
ATGAATGGCCAAATGGTAGACCGGCCCGTTGTTTTGCGGGCTCAACGTGTGATGAGCTTAGCCAAAGTTTCCAACTTACT
CGACGAGGAGGGCAATTACA

Downstream 100 bases:

>100_bases
AGTATACTGATGACAAAAATGACCCGGTTTATTACTAACTGGGTCATTTTTATTTATGGTGAATTGAAATGAGTTAAGCA
GGGCAGTTCTATTGCAAGTG

Product: citrate lyase, alpha chain

Products: NA

Alternate protein names: Citrase alpha chain; Citrate (pro-3S)-lyase alpha chain; Citrate CoA-transferase subunit [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MKNSVDRELPAELMTKLNYQGFESTEIGHPEIQRVAPKVHVSTGDNKVVDSVADVVKATVKDGMTISFHHHFRNGDFVFN
QVMRAIIDAGIKDLTLAPSSLTGVMNDMVIEAIKAGTITNITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARAIEHGDI
KIDVAFLGVPNADRLGNANGMAGKAVFGSLGYALMDAQYANQVVLLTDNIVAYPNTPASIKQTQVDYVVQVDQVGDPDKI
GSGATRFTKDPKELKIAQTVNNVIVNSPYFKNGFSFQTGSGGAALAVTRYLRQAMLDNQIKASFALGGITKPTTDLLEEG
LVDKVMDVQDFDKGAAASMHANPNQQEIDASWYADPDNKGAMVDQLDVAILSALEIDTHFNVNVMSGSDGVIRGAIGGHQ
DAATAKLTIISAPLVRGRLATIVPEVTTVVTPGDSIDVVVTEYGIAINPRRQDLVKALSHVPGVPVYMIEELQQLAEKKV
GQPQPLEFTDRTVALIEYRDGTIIDTIKAVKD

Sequences:

>Translated_512_residues
MKNSVDRELPAELMTKLNYQGFESTEIGHPEIQRVAPKVHVSTGDNKVVDSVADVVKATVKDGMTISFHHHFRNGDFVFN
QVMRAIIDAGIKDLTLAPSSLTGVMNDMVIEAIKAGTITNITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARAIEHGDI
KIDVAFLGVPNADRLGNANGMAGKAVFGSLGYALMDAQYANQVVLLTDNIVAYPNTPASIKQTQVDYVVQVDQVGDPDKI
GSGATRFTKDPKELKIAQTVNNVIVNSPYFKNGFSFQTGSGGAALAVTRYLRQAMLDNQIKASFALGGITKPTTDLLEEG
LVDKVMDVQDFDKGAAASMHANPNQQEIDASWYADPDNKGAMVDQLDVAILSALEIDTHFNVNVMSGSDGVIRGAIGGHQ
DAATAKLTIISAPLVRGRLATIVPEVTTVVTPGDSIDVVVTEYGIAINPRRQDLVKALSHVPGVPVYMIEELQQLAEKKV
GQPQPLEFTDRTVALIEYRDGTIIDTIKAVKD
>Mature_512_residues
MKNSVDRELPAELMTKLNYQGFESTEIGHPEIQRVAPKVHVSTGDNKVVDSVADVVKATVKDGMTISFHHHFRNGDFVFN
QVMRAIIDAGIKDLTLAPSSLTGVMNDMVIEAIKAGTITNITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARAIEHGDI
KIDVAFLGVPNADRLGNANGMAGKAVFGSLGYALMDAQYANQVVLLTDNIVAYPNTPASIKQTQVDYVVQVDQVGDPDKI
GSGATRFTKDPKELKIAQTVNNVIVNSPYFKNGFSFQTGSGGAALAVTRYLRQAMLDNQIKASFALGGITKPTTDLLEEG
LVDKVMDVQDFDKGAAASMHANPNQQEIDASWYADPDNKGAMVDQLDVAILSALEIDTHFNVNVMSGSDGVIRGAIGGHQ
DAATAKLTIISAPLVRGRLATIVPEVTTVVTPGDSIDVVVTEYGIAINPRRQDLVKALSHVPGVPVYMIEELQQLAEKKV
GQPQPLEFTDRTVALIEYRDGTIIDTIKAVKD

Specific function: Represents a citrate:acetyl-ACP transferase [H]

COG id: COG3051

COG function: function code C; Citrate lyase, alpha subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786832, Length=470, Percent_Identity=53.8297872340426, Blast_Score=504, Evalue=1e-144,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006472 [H]

Pfam domain/function: PF04223 CitF [H]

EC number: =4.1.3.6; =2.8.3.10 [H]

Molecular weight: Translated: 54962; Mature: 54962

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSVDRELPAELMTKLNYQGFESTEIGHPEIQRVAPKVHVSTGDNKVVDSVADVVKATV
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
KDGMTISFHHHFRNGDFVFNQVMRAIIDAGIKDLTLAPSSLTGVMNDMVIEAIKAGTITN
HCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEC
ITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARAIEHGDIKIDVAFLGVPNADRLGNANG
CCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCEEECCCEEEEEEEEECCCHHHCCCCCC
MAGKAVFGSLGYALMDAQYANQVVLLTDNIVAYPNTPASIKQTQVDYVVQVDQVGDPDKI
CCHHHHHHHHHHHHHHHHHHCEEEEEECCEEECCCCCCCHHHCCEEEEEEECCCCCCHHC
GSGATRFTKDPKELKIAQTVNNVIVNSPYFKNGFSFQTGSGGAALAVTRYLRQAMLDNQI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCHH
KASFALGGITKPTTDLLEEGLVDKVMDVQDFDKGAAASMHANPNQQEIDASWYADPDNKG
HHHEEECCCCCCHHHHHHHHHHHHHHCHHHCCCCCCEECCCCCCHHHCCCCCCCCCCCCC
AMVDQLDVAILSALEIDTHFNVNVMSGSDGVIRGAIGGHQDAATAKLTIISAPLVRGRLA
CCHHHHHHHHHHHHEECCCEEEEEEECCCCEEEECCCCCCCCCEEEEEEEECCHHHCHHH
TIVPEVTTVVTPGDSIDVVVTEYGIAINPRRQDLVKALSHVPGVPVYMIEELQQLAEKKV
HHCCCCEEEECCCCCEEEEEEECCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GQPQPLEFTDRTVALIEYRDGTIIDTIKAVKD
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHCC
>Mature Secondary Structure
MKNSVDRELPAELMTKLNYQGFESTEIGHPEIQRVAPKVHVSTGDNKVVDSVADVVKATV
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH
KDGMTISFHHHFRNGDFVFNQVMRAIIDAGIKDLTLAPSSLTGVMNDMVIEAIKAGTITN
HCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHCCCEEC
ITSSGMRGSLGDFVSHGGLKNPVIFRSHGNRARAIEHGDIKIDVAFLGVPNADRLGNANG
CCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCEEECCCEEEEEEEEECCCHHHCCCCCC
MAGKAVFGSLGYALMDAQYANQVVLLTDNIVAYPNTPASIKQTQVDYVVQVDQVGDPDKI
CCHHHHHHHHHHHHHHHHHHCEEEEEECCEEECCCCCCCHHHCCEEEEEEECCCCCCHHC
GSGATRFTKDPKELKIAQTVNNVIVNSPYFKNGFSFQTGSGGAALAVTRYLRQAMLDNQI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCHH
KASFALGGITKPTTDLLEEGLVDKVMDVQDFDKGAAASMHANPNQQEIDASWYADPDNKG
HHHEEECCCCCCHHHHHHHHHHHHHHCHHHCCCCCCEECCCCCCHHHCCCCCCCCCCCCC
AMVDQLDVAILSALEIDTHFNVNVMSGSDGVIRGAIGGHQDAATAKLTIISAPLVRGRLA
CCHHHHHHHHHHHHEECCCEEEEEEECCCCEEEECCCCCCCCCEEEEEEEECCHHHCHHH
TIVPEVTTVVTPGDSIDVVVTEYGIAINPRRQDLVKALSHVPGVPVYMIEELQQLAEKKV
HHCCCCEEEECCCCCEEEEEEECCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
GQPQPLEFTDRTVALIEYRDGTIIDTIKAVKD
CCCCCCCCCCCEEEEEEECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9457870 [H]