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The map label for this gene is ybaF [H]

Identifier: 28377869

GI number: 28377869

Start: 977223

End: 978023

Strand: Direct

Name: ybaF [H]

Synonym: lp_1075

Alternate gene names: 28377869

Gene position: 977223-978023 (Clockwise)

Preceding gene: 28377868

Following gene: 28377870

Centisome position: 29.54

GC content: 46.19

Gene sequence:

>801_bases
ATGATGAATAAATTGATCTTTGGTCGCTACATTCCGGGAGACTCCGTGGTTCACCATATGGACCCCCGAGCGAAACTGTT
ACTGAGTTTTTATTTTATTGGGATTATTTTTATTGCCAATAACTGGGCGACCTATGCCTTGCTATTTGCCTTTACATTGG
CCGCTATTTACCTATCCGGTGTGAAATGGTCGTTCTTCATCAACGGCGTCAAACCGCTGATTTGGTTGATTTTATTCACC
GTCATCCTGCAAGTGTTGTTTAGTGCAAGTGGCGGGCACGTTTACTTTCAATGGGGCATCATTACAATCAGCCAACTTGG
ATTGATCAACGGAGTCTATATTTTTTGCCGGTTCGTGTTGATTATTTTTATGTCAACGCTGTTAACTCTAACAACGCCGC
CACTGGAATTGTCGGATGCCATTGAATATATCTTGATGCCGCTCAAAGCGGTCCATTTTCCAGTCTATGAAGTGGCGCTG
ATGTTGTCGATTGCCTTACGCTTTGTGCCAACGTTGATGGACGAAACGGAAAAAATTATGAATGCACAACGGGCCCGGGG
GGTCGACTTTGGTGAAGGCAATATCTTTCAACAAATGCGTGCCGTAGTTCCGCTGCTGATTCCGCTGTTTGTCAGCTCAT
TTAACCGGGCTGAGGATTTAGCAACGGCAATGGAAGCACGTGGCTATCAAGGCGGCGAGGGTCGCAGTAAGTACCGGATT
CTTAAGTGGCACCAACGTGATACGTGGGCTACCGGATGCTTTGCGATCTTGACCGTTGCATTGATTTTCTTGCGTGCATA
A

Upstream 100 bases:

>100_bases
CAAGGCTGGCAATTTAATGAGTGGCCGTTGACCGAGGACGAATTAGCAGCAGCCATCGTCCAACAGTTGCCACCGAACGC
AATGGGGGAGGTGGCCGCTC

Downstream 100 bases:

>100_bases
ATGAAGACTGATTAACGTGGGCGTCGCACTGATGGCGACCCACGTTTTTAACTGGAGGGATATTGTGACCACGCGGTATA
AAGTAGTTTTAGCATATGAC

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MMNKLIFGRYIPGDSVVHHMDPRAKLLLSFYFIGIIFIANNWATYALLFAFTLAAIYLSGVKWSFFINGVKPLIWLILFT
VILQVLFSASGGHVYFQWGIITISQLGLINGVYIFCRFVLIIFMSTLLTLTTPPLELSDAIEYILMPLKAVHFPVYEVAL
MLSIALRFVPTLMDETEKIMNAQRARGVDFGEGNIFQQMRAVVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRSKYRI
LKWHQRDTWATGCFAILTVALIFLRA

Sequences:

>Translated_266_residues
MMNKLIFGRYIPGDSVVHHMDPRAKLLLSFYFIGIIFIANNWATYALLFAFTLAAIYLSGVKWSFFINGVKPLIWLILFT
VILQVLFSASGGHVYFQWGIITISQLGLINGVYIFCRFVLIIFMSTLLTLTTPPLELSDAIEYILMPLKAVHFPVYEVAL
MLSIALRFVPTLMDETEKIMNAQRARGVDFGEGNIFQQMRAVVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRSKYRI
LKWHQRDTWATGCFAILTVALIFLRA
>Mature_266_residues
MMNKLIFGRYIPGDSVVHHMDPRAKLLLSFYFIGIIFIANNWATYALLFAFTLAAIYLSGVKWSFFINGVKPLIWLILFT
VILQVLFSASGGHVYFQWGIITISQLGLINGVYIFCRFVLIIFMSTLLTLTTPPLELSDAIEYILMPLKAVHFPVYEVAL
MLSIALRFVPTLMDETEKIMNAQRARGVDFGEGNIFQQMRAVVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRSKYRI
LKWHQRDTWATGCFAILTVALIFLRA

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 30151; Mature: 30151

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNKLIFGRYIPGDSVVHHMDPRAKLLLSFYFIGIIFIANNWATYALLFAFTLAAIYLSG
CCCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
VKWSFFINGVKPLIWLILFTVILQVLFSASGGHVYFQWGIITISQLGLINGVYIFCRFVL
CHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
IIFMSTLLTLTTPPLELSDAIEYILMPLKAVHFPVYEVALMLSIALRFVPTLMDETEKIM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAQRARGVDFGEGNIFQQMRAVVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRSKYRI
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCE
LKWHQRDTWATGCFAILTVALIFLRA
EEECCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMNKLIFGRYIPGDSVVHHMDPRAKLLLSFYFIGIIFIANNWATYALLFAFTLAAIYLSG
CCCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
VKWSFFINGVKPLIWLILFTVILQVLFSASGGHVYFQWGIITISQLGLINGVYIFCRFVL
CHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH
IIFMSTLLTLTTPPLELSDAIEYILMPLKAVHFPVYEVALMLSIALRFVPTLMDETEKIM
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAQRARGVDFGEGNIFQQMRAVVPLLIPLFVSSFNRAEDLATAMEARGYQGGEGRSKYRI
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCE
LKWHQRDTWATGCFAILTVALIFLRA
EEECCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]