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The map label for this gene is secY [H]

Identifier: 28377852

GI number: 28377852

Start: 962068

End: 963363

Strand: Direct

Name: secY [H]

Synonym: lp_1056

Alternate gene names: 28377852

Gene position: 962068-963363 (Clockwise)

Preceding gene: 28377851

Following gene: 28377853

Centisome position: 29.08

GC content: 43.29

Gene sequence:

>1296_bases
TTGCTGACTACCATGAAGAACGCTCTCAAAGTTAAGGATATTCGGAATAAACTTCTGTTCACGTTGGGCGTTTTGATTGT
ATTTCGTCTTGGCTCTTATATCACAGTTCCTGGAGTTAATGCACAGGCACTTCAGTCGGTGGCATCTTCAGGGCTGATAA
GTATGTTGAATACATTCAGTGGTGGCGGTTTAACAAATTATTCCATCCTTGCTATGGGGGTATCCCCTTACATTACTGCA
CAAATCATCGTTCAATTGTTACAAATGGACATTGTTCCTAAGTTTGTTGAATGGGGCAAACAAGGTGAAGTTGGTCGACG
CAAGCTTAATCAAGCGACCCGTTGGTTAACGATCGTCTTGGCCTTTGTTCAGTCGATTGGGATTACGGCTGGTTTTAACT
CTTTGAGTCAACTCAAGCTCGTTAACAATCCAAGTATTTCGACTTACCTGACCATTGGGGTGATCCTCACTGGTGGGGCA
ATGCTGACGACTTGGATGGGTGATATGATTACGGATCGAGGAATCGGTAATGGGGTTTCCATTATTATCTTCGCCGGGAT
CATTGCCCGTATGCCAACATCGATTTATCAAATTTATCAAGAACAGTTCGTTAATGTTTCACAGAGCGACTGGTGGAAGA
GTGGCTTGTTTGTTGTTGGGTTAGCCTTGCTTGTGCTGATCATCGTTATGTTTGTAACGTGGGTCGAACAAGCTAATGAC
CGAATTCCAATTCAATACACTCGTCGTGCAGCTGGTGCACCTGACAGTAGTTACCTACCATTAAAGGTGAACGTTGCCGG
GGTTATTCCTGTTATTTTCGCGAGTTCCTTCATTGCAACGCCCCAAACGATTTTGCTAGGGTTCCAATCCAGTCATGGTG
ACGAAACCTGGTATACCGTTTTGAGTAATATCTTCAATATGCAGTCGACGACTGGTGCTATTCTTTACACCATTCTGATC
GTGCTCTTCACGTTCTTCTATGCGTTTGTTCAGGTCAATCCTGAAAAGCTCTCTAAGAACTTACAAAAGCAAGGCAGCTA
TATTCCTGGTGTTTGGCCAGGTAAGGATACTCAAGATTGGGTTTCAAAATTGTTAATGCGACTAAGTACGGTCGGTGCCC
TCTACCTTGGGTTGATTTCCTTGATTCCATTATTAGCTTCTGATATTTGGGGTCTCGATGAATCAATCGGTTTAGGTGGG
ACGAGTTTACTAATCGTTGTTGGGGTTGCCCTTGAAACAATTCGTCAAATTAAAGGATTGATGATGAAACGTGACTATGT
CGGTTTCATTCGTTAA

Upstream 100 bases:

>100_bases
GGTAAACTCAACAAAAAGTTAACAGTTAAGGCAAGCAAGTTCTCTGCAACGGCGGTTGCAGCCATTGAAGCTGCTGGCGG
TAAAACTGAGGTGATCTAAT

Downstream 100 bases:

>100_bases
TCAGCGAATGTGTTGGGGAGACTCAACACATTTGTGCATTCAGGAGGAAAAAACATGTCAACAATGAACCTGATTTTAAT
GGGATTACCGGGTGCCGGTA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MLTTMKNALKVKDIRNKLLFTLGVLIVFRLGSYITVPGVNAQALQSVASSGLISMLNTFSGGGLTNYSILAMGVSPYITA
QIIVQLLQMDIVPKFVEWGKQGEVGRRKLNQATRWLTIVLAFVQSIGITAGFNSLSQLKLVNNPSISTYLTIGVILTGGA
MLTTWMGDMITDRGIGNGVSIIIFAGIIARMPTSIYQIYQEQFVNVSQSDWWKSGLFVVGLALLVLIIVMFVTWVEQAND
RIPIQYTRRAAGAPDSSYLPLKVNVAGVIPVIFASSFIATPQTILLGFQSSHGDETWYTVLSNIFNMQSTTGAILYTILI
VLFTFFYAFVQVNPEKLSKNLQKQGSYIPGVWPGKDTQDWVSKLLMRLSTVGALYLGLISLIPLLASDIWGLDESIGLGG
TSLLIVVGVALETIRQIKGLMMKRDYVGFIR

Sequences:

>Translated_431_residues
MLTTMKNALKVKDIRNKLLFTLGVLIVFRLGSYITVPGVNAQALQSVASSGLISMLNTFSGGGLTNYSILAMGVSPYITA
QIIVQLLQMDIVPKFVEWGKQGEVGRRKLNQATRWLTIVLAFVQSIGITAGFNSLSQLKLVNNPSISTYLTIGVILTGGA
MLTTWMGDMITDRGIGNGVSIIIFAGIIARMPTSIYQIYQEQFVNVSQSDWWKSGLFVVGLALLVLIIVMFVTWVEQAND
RIPIQYTRRAAGAPDSSYLPLKVNVAGVIPVIFASSFIATPQTILLGFQSSHGDETWYTVLSNIFNMQSTTGAILYTILI
VLFTFFYAFVQVNPEKLSKNLQKQGSYIPGVWPGKDTQDWVSKLLMRLSTVGALYLGLISLIPLLASDIWGLDESIGLGG
TSLLIVVGVALETIRQIKGLMMKRDYVGFIR
>Mature_431_residues
MLTTMKNALKVKDIRNKLLFTLGVLIVFRLGSYITVPGVNAQALQSVASSGLISMLNTFSGGGLTNYSILAMGVSPYITA
QIIVQLLQMDIVPKFVEWGKQGEVGRRKLNQATRWLTIVLAFVQSIGITAGFNSLSQLKLVNNPSISTYLTIGVILTGGA
MLTTWMGDMITDRGIGNGVSIIIFAGIIARMPTSIYQIYQEQFVNVSQSDWWKSGLFVVGLALLVLIIVMFVTWVEQAND
RIPIQYTRRAAGAPDSSYLPLKVNVAGVIPVIFASSFIATPQTILLGFQSSHGDETWYTVLSNIFNMQSTTGAILYTILI
VLFTFFYAFVQVNPEKLSKNLQKQGSYIPGVWPGKDTQDWVSKLLMRLSTVGALYLGLISLIPLLASDIWGLDESIGLGG
TSLLIVVGVALETIRQIKGLMMKRDYVGFIR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=422, Percent_Identity=42.4170616113744, Blast_Score=266, Evalue=1e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47186; Mature: 47186

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTTMKNALKVKDIRNKLLFTLGVLIVFRLGSYITVPGVNAQALQSVASSGLISMLNTFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCC
GGGLTNYSILAMGVSPYITAQIIVQLLQMDIVPKFVEWGKQGEVGRRKLNQATRWLTIVL
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AFVQSIGITAGFNSLSQLKLVNNPSISTYLTIGVILTGGAMLTTWMGDMITDRGIGNGVS
HHHHHHCCCCCCCCHHHEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
IIIFAGIIARMPTSIYQIYQEQFVNVSQSDWWKSGLFVVGLALLVLIIVMFVTWVEQAND
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
RIPIQYTRRAAGAPDSSYLPLKVNVAGVIPVIFASSFIATPQTILLGFQSSHGDETWYTV
CCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHHHH
LSNIFNMQSTTGAILYTILIVLFTFFYAFVQVNPEKLSKNLQKQGSYIPGVWPGKDTQDW
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
VSKLLMRLSTVGALYLGLISLIPLLASDIWGLDESIGLGGTSLLIVVGVALETIRQIKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MMKRDYVGFIR
HHHHHHHCCCC
>Mature Secondary Structure
MLTTMKNALKVKDIRNKLLFTLGVLIVFRLGSYITVPGVNAQALQSVASSGLISMLNTFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCC
GGGLTNYSILAMGVSPYITAQIIVQLLQMDIVPKFVEWGKQGEVGRRKLNQATRWLTIVL
CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
AFVQSIGITAGFNSLSQLKLVNNPSISTYLTIGVILTGGAMLTTWMGDMITDRGIGNGVS
HHHHHHCCCCCCCCHHHEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHH
IIIFAGIIARMPTSIYQIYQEQFVNVSQSDWWKSGLFVVGLALLVLIIVMFVTWVEQAND
HHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
RIPIQYTRRAAGAPDSSYLPLKVNVAGVIPVIFASSFIATPQTILLGFQSSHGDETWYTV
CCCHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCHHHEEEECCCCCCHHHHHH
LSNIFNMQSTTGAILYTILIVLFTFFYAFVQVNPEKLSKNLQKQGSYIPGVWPGKDTQDW
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHH
VSKLLMRLSTVGALYLGLISLIPLLASDIWGLDESIGLGGTSLLIVVGVALETIRQIKGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
MMKRDYVGFIR
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]