| Definition | Lactobacillus plantarum WCFS1, complete genome. |
|---|---|
| Accession | NC_004567 |
| Length | 3,308,274 |
Click here to switch to the map view.
The map label for this gene is 28377291
Identifier: 28377291
GI number: 28377291
Start: 349537
End: 349800
Strand: Direct
Name: 28377291
Synonym: lp_0376
Alternate gene names: NA
Gene position: 349537-349800 (Clockwise)
Preceding gene: 28377290
Following gene: 28377292
Centisome position: 10.57
GC content: 37.88
Gene sequence:
>264_bases ATGGCAACGATTATAATTATTGGAGTAGTAATTATAGGAATTACGCTGGGATTAGGATACTGGAGTTATTTACTGGGAAA AAAGAATCAATCTAATTTTGTTGGCACTATTATTCCAGTAGCTTATTTTGCTGTTCGAGCAATCTTAGCTGTGATGACAC AAACTGCGACACATGGGCTAGTATCGTCATTAGTCGGTAGCTTGTTATTCAGCTTGATTTACTATGGCTTATTTGTTTGG GGGAAGCACCGGGCCAATAAGTAA
Upstream 100 bases:
>100_bases TCTGCTATCTGAAAATAAAAATGACGATATCTCATTGAATATTAGAAATTAAATTAACCTGAAATGCGAAAATAGCCAAA AATTAATTGGAGGTTGAAAA
Downstream 100 bases:
>100_bases TATGAATTAGTCAGTTTAAGATAACCGATATTCGACAAGGGCTAATTGCCGAGTATCGGTTATTTTATAGAACAGTTGAG TTATGAGGGAGGAAACGACA
Product: integral membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 87; Mature: 86
Protein sequence:
>87_residues MATIIIIGVVIIGITLGLGYWSYLLGKKNQSNFVGTIIPVAYFAVRAILAVMTQTATHGLVSSLVGSLLFSLIYYGLFVW GKHRANK
Sequences:
>Translated_87_residues MATIIIIGVVIIGITLGLGYWSYLLGKKNQSNFVGTIIPVAYFAVRAILAVMTQTATHGLVSSLVGSLLFSLIYYGLFVW GKHRANK >Mature_86_residues ATIIIIGVVIIGITLGLGYWSYLLGKKNQSNFVGTIIPVAYFAVRAILAVMTQTATHGLVSSLVGSLLFSLIYYGLFVWG KHRANK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 9431; Mature: 9300
Theoretical pI: Translated: 10.52; Mature: 10.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATIIIIGVVIIGITLGLGYWSYLLGKKNQSNFVGTIIPVAYFAVRAILAVMTQTATHGL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSSLVGSLLFSLIYYGLFVWGKHRANK HHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ATIIIIGVVIIGITLGLGYWSYLLGKKNQSNFVGTIIPVAYFAVRAILAVMTQTATHGL HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH VSSLVGSLLFSLIYYGLFVWGKHRANK HHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA