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The map label for this gene is glcD [H]

Identifier: 28377214

GI number: 28377214

Start: 263170

End: 264564

Strand: Direct

Name: glcD [H]

Synonym: lp_0291

Alternate gene names: 28377214

Gene position: 263170-264564 (Clockwise)

Preceding gene: 28377212

Following gene: 28377215

Centisome position: 7.95

GC content: 47.81

Gene sequence:

>1395_bases
TTGACAGTCTTTCGCGCATTTTCTAACCAAGAAGTTTTAGATTATTTAGCAACGCAAGTCACTGACGGGCAGGTCTTCAC
TGACGAGGAGACGCTGAAAAAATACTCTTTCAGTCCGCGGTTGACCGATGACGATAGTGGCCTTGCCTTAGCCTATGTTG
AAGCACATACGACCAAGGACATTCAAGGAACGTTGAAAACGGCCCGTAAATACCACATCGCAGTGATTCCCCAAGACCAA
ACAACGAGCACTGTTATCGGTGCGGACGGGTTAACGGACAGTCTGATTCTTTCAACCGCCAAGATGAACCGAATCATCGA
AATTAGCAAGGCTGATTCCATCGCCGTGGTTGAACCCGGCGTCGTTAACGGTGATCTGGATAAAGAAGCACGCAAGCAGG
GTATGTTCTACGCGCCGGACCCTGGTTCTAAGCCCATCTCTGGGATTGGCGGTAATGTGGCGACAAACGCCGGCGGGATG
AGTACGGTCAAGTATGGGGCTACTAAGGACAATGTCTTAGGCGTTAAGGTCGTTTTAGCCGATGGTCGCGAAGTTAAGTT
AGGCGGTCGGACGCTAAAGCAGGCCTTTGGTTATGATTTAACGCAATTGATGATTGGTTCGGAAGGCACGTTAGGAATCA
TTACCGAAGTAATCGTTAAACTGTTGCCGATTCCGCTAGGGACCCCCGTGATGGGCGTCGCCTTTTTCGATAATATGACA
GCCTTGGCTAAAGCAGTCACGGCGATTCGAATCTCCGGTGTTTATCCAACGATGCTAGAGGCATTGGATGGCAACACGGT
TGCGGCACTCGATCGCTACGAGAAGACGCACTATGCTAAGAATAGTGCGGCGATGTTGATCTTTAAGCTTGATAATGGTG
GTCAGGATAGTATGGCAGTCGTTAAGAAGATACTGGCCGAACAGCAAGCCAACGATGTTAAGATTACGACCGAGCCTAAG
GAACAGGCAGCGCTAGAACAATTACGGCGCGATATGCTGCCGGCAGTTTTTGCTGGTCAGAATCATATTATGGAAGATAT
GGCCGTGCCATTATCGCAATTAGCCCCATTAATGGACTATATTCAAGAACTATCCAAGCGGTTAGACGTCGAAATCTATA
CGGCTGGACATGCTGGCGATGGTAATGTGCACCCGACCTTAGTGTGGCCAACGTCGGTAACCGAAGTGCCTGAAAAAATC
ATTATTGCGCTACAAGAAATGTTTAAGAAGACGCTGGCACTTGGTGGGACGATTTCGGGTGAACACGCAGTCGGAATGTT
GAAAAATCAATGGAACAATGCCGAATTAGGCGAAGATGTTGATATGTTGCAACATCAGATCAAAGCACTCTTTGACCCGA
TGAATATTTTGAACCCGAAACGTAAAATCAATTAA

Upstream 100 bases:

>100_bases
CAAATTAGGAGCGGTCACTTACGGACAGTATTACGGCAGAAAACGGATTCTTGGCTTATACTGACAGTGAACTTAAATAT
ATGAAGTGAGGTTTGGTAAT

Downstream 100 bases:

>100_bases
CCCAACGATTACAAAGCGCTTAAGTTTTGATAGCAGTTGTTGGTCAGATATTGCGTAACTTGGTCATCGTGTCTTATTAT
TGAGATAGTCCCAAAAATGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MTVFRAFSNQEVLDYLATQVTDGQVFTDEETLKKYSFSPRLTDDDSGLALAYVEAHTTKDIQGTLKTARKYHIAVIPQDQ
TTSTVIGADGLTDSLILSTAKMNRIIEISKADSIAVVEPGVVNGDLDKEARKQGMFYAPDPGSKPISGIGGNVATNAGGM
STVKYGATKDNVLGVKVVLADGREVKLGGRTLKQAFGYDLTQLMIGSEGTLGIITEVIVKLLPIPLGTPVMGVAFFDNMT
ALAKAVTAIRISGVYPTMLEALDGNTVAALDRYEKTHYAKNSAAMLIFKLDNGGQDSMAVVKKILAEQQANDVKITTEPK
EQAALEQLRRDMLPAVFAGQNHIMEDMAVPLSQLAPLMDYIQELSKRLDVEIYTAGHAGDGNVHPTLVWPTSVTEVPEKI
IIALQEMFKKTLALGGTISGEHAVGMLKNQWNNAELGEDVDMLQHQIKALFDPMNILNPKRKIN

Sequences:

>Translated_464_residues
MTVFRAFSNQEVLDYLATQVTDGQVFTDEETLKKYSFSPRLTDDDSGLALAYVEAHTTKDIQGTLKTARKYHIAVIPQDQ
TTSTVIGADGLTDSLILSTAKMNRIIEISKADSIAVVEPGVVNGDLDKEARKQGMFYAPDPGSKPISGIGGNVATNAGGM
STVKYGATKDNVLGVKVVLADGREVKLGGRTLKQAFGYDLTQLMIGSEGTLGIITEVIVKLLPIPLGTPVMGVAFFDNMT
ALAKAVTAIRISGVYPTMLEALDGNTVAALDRYEKTHYAKNSAAMLIFKLDNGGQDSMAVVKKILAEQQANDVKITTEPK
EQAALEQLRRDMLPAVFAGQNHIMEDMAVPLSQLAPLMDYIQELSKRLDVEIYTAGHAGDGNVHPTLVWPTSVTEVPEKI
IIALQEMFKKTLALGGTISGEHAVGMLKNQWNNAELGEDVDMLQHQIKALFDPMNILNPKRKIN
>Mature_463_residues
TVFRAFSNQEVLDYLATQVTDGQVFTDEETLKKYSFSPRLTDDDSGLALAYVEAHTTKDIQGTLKTARKYHIAVIPQDQT
TSTVIGADGLTDSLILSTAKMNRIIEISKADSIAVVEPGVVNGDLDKEARKQGMFYAPDPGSKPISGIGGNVATNAGGMS
TVKYGATKDNVLGVKVVLADGREVKLGGRTLKQAFGYDLTQLMIGSEGTLGIITEVIVKLLPIPLGTPVMGVAFFDNMTA
LAKAVTAIRISGVYPTMLEALDGNTVAALDRYEKTHYAKNSAAMLIFKLDNGGQDSMAVVKKILAEQQANDVKITTEPKE
QAALEQLRRDMLPAVFAGQNHIMEDMAVPLSQLAPLMDYIQELSKRLDVEIYTAGHAGDGNVHPTLVWPTSVTEVPEKII
IALQEMFKKTLALGGTISGEHAVGMLKNQWNNAELGEDVDMLQHQIKALFDPMNILNPKRKIN

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI37595756, Length=396, Percent_Identity=30.5555555555556, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI37595754, Length=419, Percent_Identity=28.8782816229117, Blast_Score=166, Evalue=6e-41,
Organism=Homo sapiens, GI119964728, Length=471, Percent_Identity=28.4501061571125, Blast_Score=160, Evalue=2e-39,
Organism=Homo sapiens, GI4501993, Length=210, Percent_Identity=30, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI1789351, Length=413, Percent_Identity=32.6876513317191, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI48994907, Length=488, Percent_Identity=24.3852459016393, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787977, Length=545, Percent_Identity=24.5871559633028, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI48994914, Length=113, Percent_Identity=31.858407079646, Blast_Score=73, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71992373, Length=475, Percent_Identity=29.0526315789474, Blast_Score=168, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI71992381, Length=365, Percent_Identity=32.6027397260274, Blast_Score=164, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI71992392, Length=367, Percent_Identity=32.425068119891, Blast_Score=164, Evalue=7e-41,
Organism=Caenorhabditis elegans, GI17534361, Length=422, Percent_Identity=27.7251184834123, Blast_Score=144, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17556096, Length=464, Percent_Identity=24.1379310344828, Blast_Score=92, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6320027, Length=431, Percent_Identity=30.3944315545244, Blast_Score=163, Evalue=6e-41,
Organism=Saccharomyces cerevisiae, GI6320023, Length=486, Percent_Identity=26.1316872427983, Blast_Score=127, Evalue=4e-30,
Organism=Saccharomyces cerevisiae, GI6320764, Length=490, Percent_Identity=24.8979591836735, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI18921117, Length=460, Percent_Identity=28.695652173913, Blast_Score=165, Evalue=6e-41,
Organism=Drosophila melanogaster, GI24639277, Length=460, Percent_Identity=28.695652173913, Blast_Score=165, Evalue=6e-41,
Organism=Drosophila melanogaster, GI24639275, Length=460, Percent_Identity=28.695652173913, Blast_Score=165, Evalue=6e-41,
Organism=Drosophila melanogaster, GI24653753, Length=488, Percent_Identity=24.1803278688525, Blast_Score=96, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50221; Mature: 50090

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVFRAFSNQEVLDYLATQVTDGQVFTDEETLKKYSFSPRLTDDDSGLALAYVEAHTTKD
CCEEECCCCHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHH
IQGTLKTARKYHIAVIPQDQTTSTVIGADGLTDSLILSTAKMNRIIEISKADSIAVVEPG
HHHHHHHCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHEEEEECCCCEEEECCC
VVNGDLDKEARKQGMFYAPDPGSKPISGIGGNVATNAGGMSTVKYGATKDNVLGVKVVLA
CCCCCCCHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEE
DGREVKLGGRTLKQAFGYDLTQLMIGSEGTLGIITEVIVKLLPIPLGTPVMGVAFFDNMT
CCCEEEECHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALAKAVTAIRISGVYPTMLEALDGNTVAALDRYEKTHYAKNSAAMLIFKLDNGGQDSMAV
HHHHHHHHHEECCCCHHHHHHHCCCEEEHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
VKKILAEQQANDVKITTEPKEQAALEQLRRDMLPAVFAGQNHIMEDMAVPLSQLAPLMDY
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCHHHHCCCHHHHHHHHCCHHHHHHHHHH
IQELSKRLDVEIYTAGHAGDGNVHPTLVWPTSVTEVPEKIIIALQEMFKKTLALGGTISG
HHHHHHHCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EHAVGMLKNQWNNAELGEDVDMLQHQIKALFDPMNILNPKRKIN
CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCHHCCC
>Mature Secondary Structure 
TVFRAFSNQEVLDYLATQVTDGQVFTDEETLKKYSFSPRLTDDDSGLALAYVEAHTTKD
CEEECCCCHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHH
IQGTLKTARKYHIAVIPQDQTTSTVIGADGLTDSLILSTAKMNRIIEISKADSIAVVEPG
HHHHHHHCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHEEEEECCCCEEEECCC
VVNGDLDKEARKQGMFYAPDPGSKPISGIGGNVATNAGGMSTVKYGATKDNVLGVKVVLA
CCCCCCCHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEE
DGREVKLGGRTLKQAFGYDLTQLMIGSEGTLGIITEVIVKLLPIPLGTPVMGVAFFDNMT
CCCEEEECHHHHHHHHCCCHHHHEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
ALAKAVTAIRISGVYPTMLEALDGNTVAALDRYEKTHYAKNSAAMLIFKLDNGGQDSMAV
HHHHHHHHHEECCCCHHHHHHHCCCEEEHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHH
VKKILAEQQANDVKITTEPKEQAALEQLRRDMLPAVFAGQNHIMEDMAVPLSQLAPLMDY
HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCHHHHCCCHHHHHHHHCCHHHHHHHHHH
IQELSKRLDVEIYTAGHAGDGNVHPTLVWPTSVTEVPEKIIIALQEMFKKTLALGGTISG
HHHHHHHCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EHAVGMLKNQWNNAELGEDVDMLQHQIKALFDPMNILNPKRKIN
CHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]