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The map label for this gene is rpiR [C]

Identifier: 28377209

GI number: 28377209

Start: 258406

End: 259137

Strand: Direct

Name: rpiR [C]

Synonym: lp_0285

Alternate gene names: 28377209

Gene position: 258406-259137 (Clockwise)

Preceding gene: 28377208

Following gene: 28377210

Centisome position: 7.81

GC content: 45.22

Gene sequence:

>732_bases
ATGTTTTCGTACGATCAGGTCCAGCAGTTAAACCGCTTGGAAATTGAAATTTATAAGTATATTGTGGGTCATCCCGCTGA
AGTAAGTACTATGACGATTCGACAATTGGCCGACCATAGTCACGTCTCAGCAACGACTATTTTGCGTTTTCTAAAGCACA
TGGGCTATGATGGCTACGCAGAATTTAAGTTCACATTAAAAGAACAGTTACGGCAAGATGCCACACAACCGTTAGCTCAG
ACAGTTGTACCGATGCGGACGTTTTTTGACCGCATGAACTTACCTGATATCACGGCTAAACTTCATCGGGTCGCAGAACT
GGTTCATCAAGCTCGAATGGTCGTACTGATTGGGTCAGGGACGAGTGCTGGCCTGGCCGCGTATGGCAGCCATTTATTCG
CTAACTTTGGTTTATATAGCTTGATGATTAGTGATACGAGTCAGCCCCATCCGGTTCAGCAACAGGATTTATCGGATACC
GTCTTTTTCGCACTTTCAGTATCTGGAGAGTCTGAAGATATTATTGAACAAAGCGTTTATTATCGGCAGAGTGGCGCGAA
GGTGGTCGCTATTACCGCTAGCAGTCATTCGACGTTAGCTGGGATTGCGGACGTGGTGTTAACTTATGATACCCCGGAAG
TTCAAGCAATCAGTGGTGGTAGCACCTTGTCCCAGTTGCCCGTCGTTTATTATCTGGAACAATTAGCTATGATTATTCAG
CCATTAACGTAA

Upstream 100 bases:

>100_bases
GTCGGTGGGGCGATCAATAAGCGGAATTTGTTCCCATAAATTCTAATGGTCATATTAATTTAATGATAGACCAATTAATC
AATAGTGACGGGGTGAGTCA

Downstream 100 bases:

>100_bases
AGGTAATTCAAACCAATCTTTGGAACATGTTCTAAAAATGGAACAAATTCCGATGGATGGAACAACACCCATTTTAGAGT
GAAAGGGTATACATTTTGAG

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MFSYDQVQQLNRLEIEIYKYIVGHPAEVSTMTIRQLADHSHVSATTILRFLKHMGYDGYAEFKFTLKEQLRQDATQPLAQ
TVVPMRTFFDRMNLPDITAKLHRVAELVHQARMVVLIGSGTSAGLAAYGSHLFANFGLYSLMISDTSQPHPVQQQDLSDT
VFFALSVSGESEDIIEQSVYYRQSGAKVVAITASSHSTLAGIADVVLTYDTPEVQAISGGSTLSQLPVVYYLEQLAMIIQ
PLT

Sequences:

>Translated_243_residues
MFSYDQVQQLNRLEIEIYKYIVGHPAEVSTMTIRQLADHSHVSATTILRFLKHMGYDGYAEFKFTLKEQLRQDATQPLAQ
TVVPMRTFFDRMNLPDITAKLHRVAELVHQARMVVLIGSGTSAGLAAYGSHLFANFGLYSLMISDTSQPHPVQQQDLSDT
VFFALSVSGESEDIIEQSVYYRQSGAKVVAITASSHSTLAGIADVVLTYDTPEVQAISGGSTLSQLPVVYYLEQLAMIIQ
PLT
>Mature_243_residues
MFSYDQVQQLNRLEIEIYKYIVGHPAEVSTMTIRQLADHSHVSATTILRFLKHMGYDGYAEFKFTLKEQLRQDATQPLAQ
TVVPMRTFFDRMNLPDITAKLHRVAELVHQARMVVLIGSGTSAGLAAYGSHLFANFGLYSLMISDTSQPHPVQQQDLSDT
VFFALSVSGESEDIIEQSVYYRQSGAKVVAITASSHSTLAGIADVVLTYDTPEVQAISGGSTLSQLPVVYYLEQLAMIIQ
PLT

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082369, Length=219, Percent_Identity=24.2009132420091, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 26937; Mature: 26937

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSYDQVQQLNRLEIEIYKYIVGHPAEVSTMTIRQLADHSHVSATTILRFLKHMGYDGYA
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHH
EFKFTLKEQLRQDATQPLAQTVVPMRTFFDRMNLPDITAKLHRVAELVHQARMVVLIGSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECC
TSAGLAAYGSHLFANFGLYSLMISDTSQPHPVQQQDLSDTVFFALSVSGESEDIIEQSVY
CCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHCCCCEEEEEEEECCCCHHHHHHHHH
YRQSGAKVVAITASSHSTLAGIADVVLTYDTPEVQAISGGSTLSQLPVVYYLEQLAMIIQ
HHCCCCEEEEEECCCCCHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
PLT
CCC
>Mature Secondary Structure
MFSYDQVQQLNRLEIEIYKYIVGHPAEVSTMTIRQLADHSHVSATTILRFLKHMGYDGYA
CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHH
EFKFTLKEQLRQDATQPLAQTVVPMRTFFDRMNLPDITAKLHRVAELVHQARMVVLIGSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECC
TSAGLAAYGSHLFANFGLYSLMISDTSQPHPVQQQDLSDTVFFALSVSGESEDIIEQSVY
CCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHCCCCEEEEEEEECCCCHHHHHHHHH
YRQSGAKVVAITASSHSTLAGIADVVLTYDTPEVQAISGGSTLSQLPVVYYLEQLAMIIQ
HHCCCCEEEEEECCCCCHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHH
PLT
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]