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The map label for this gene is hsp18 [H]

Identifier: 28212053

GI number: 28212053

Start: 2623426

End: 2623866

Strand: Direct

Name: hsp18 [H]

Synonym: CTC02469

Alternate gene names: 28212053

Gene position: 2623426-2623866 (Clockwise)

Preceding gene: 28212043

Following gene: 28212092

Centisome position: 93.72

GC content: 23.58

Gene sequence:

>441_bases
ATGTTTGATATGATTCCATTTAAAAGAAATAATTCTATGAAAAGAGATTCTTACTTCGATGAATTCTTTGATAATTTCTT
TAATAATGATTTCTTAGTACCTATTAAATTTCCAAAAAATAATTTTCGAGCAGATTTAAAAGAAACCAATAATGAATATA
TAATTGAAGCAGATTTACCTGGAATTTCAAAAGATGCTGTTAAAGTAAATTACTCTAATAATAATCTTGTAATTTCAGCT
AAAAGAGAAGATATTATAGAAAATAAAGATGAAAACTATATAAGACGTGAGAGAAGCTATGGAGAATTCAAAAGAGCTTT
TTATGTAGATAATGTAGATGAAAATAATATAAAAGCTTCTTTTAAAAACGGAGTATTAAGAATAAATCTGACTAAACTAG
AAGATACTACAAAAGCTAGAAAACAAATTGAAATTGAATAA

Upstream 100 bases:

>100_bases
TTGACTTTCTTTGACTTTGGTGCTATAATATGCTTACAAGGTAAAAGAAAAAATTAATCTAACATTATATTTATGTAAAA
TAAATAGGAGGTTTGGTATA

Downstream 100 bases:

>100_bases
AAATAAGTGAGTCATCAAAATATAGATGACTCACTTATTTTTATTCACAAATTCTCCAAATCCCATAAATACAATCCACA
CATAAGCTATTGTCTTAGGT

Product: heat shock protein, molecular chaperone

Products: NA

Alternate protein names: HSP 18 [H]

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MFDMIPFKRNNSMKRDSYFDEFFDNFFNNDFLVPIKFPKNNFRADLKETNNEYIIEADLPGISKDAVKVNYSNNNLVISA
KREDIIENKDENYIRRERSYGEFKRAFYVDNVDENNIKASFKNGVLRINLTKLEDTTKARKQIEIE

Sequences:

>Translated_146_residues
MFDMIPFKRNNSMKRDSYFDEFFDNFFNNDFLVPIKFPKNNFRADLKETNNEYIIEADLPGISKDAVKVNYSNNNLVISA
KREDIIENKDENYIRRERSYGEFKRAFYVDNVDENNIKASFKNGVLRINLTKLEDTTKARKQIEIE
>Mature_146_residues
MFDMIPFKRNNSMKRDSYFDEFFDNFFNNDFLVPIKFPKNNFRADLKETNNEYIIEADLPGISKDAVKVNYSNNNLVISA
KREDIIENKDENYIRRERSYGEFKRAFYVDNVDENNIKASFKNGVLRINLTKLEDTTKARKQIEIE

Specific function: Probable chaperone [H]

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17402; Mature: 17402

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDMIPFKRNNSMKRDSYFDEFFDNFFNNDFLVPIKFPKNNFRADLKETNNEYIIEADLP
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCCEEEEECCC
GISKDAVKVNYSNNNLVISAKREDIIENKDENYIRRERSYGEFKRAFYVDNVDENNIKAS
CCCCCEEEEEECCCEEEEEECCHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCEEEE
FKNGVLRINLTKLEDTTKARKQIEIE
CCCCEEEEEEEECCCHHHHHHEECCC
>Mature Secondary Structure
MFDMIPFKRNNSMKRDSYFDEFFDNFFNNDFLVPIKFPKNNFRADLKETNNEYIIEADLP
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCCEEEEECCC
GISKDAVKVNYSNNNLVISAKREDIIENKDENYIRRERSYGEFKRAFYVDNVDENNIKAS
CCCCCEEEEEECCCEEEEEECCHHHHCCCCCHHHHHHHCCCCCEEEEEECCCCCCCEEEE
FKNGVLRINLTKLEDTTKARKQIEIE
CCCCEEEEEEEECCCHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501044; 11466286 [H]