Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

Click here to switch to the map view.

The map label for this gene is 28211881

Identifier: 28211881

GI number: 28211881

Start: 2408924

End: 2409232

Strand: Direct

Name: 28211881

Synonym: CTC02282

Alternate gene names: NA

Gene position: 2408924-2409232 (Clockwise)

Preceding gene: 28211871

Following gene: 28211886

Centisome position: 86.06

GC content: 28.48

Gene sequence:

>309_bases
GTGTCTACAGTAACCAATCCAGTAACACAGGTAGCAGATGTAGATATAAAAAAGCAATCTATTAAAGGAGTCTTCTCTCC
ACTATTAGTAGCTATAGATAGATTTAATAGTATAGTACCTGTAAGAATAACTATTGCAAAACCCAATGCTAAAATTCTAA
ATGGAGTAGCTCTTCTCATTTTAAATTTTTGTAAATTCATACATGTCTCCTCTCTTACTAAAGTGATACCTAATTGTTGT
TTCTCAATATATTTAATGAAATTATATCACTGTAAACACAAATGTCAATTATATGCTATATTCATATAA

Upstream 100 bases:

>100_bases
AATTAAAGCTACTAATGTACCAAAAGACATAAAGCCTAAGCCACCTATTTCAATCAATAACATTATAACGGTTTTACCAA
AATAATTCCAATGAGTCCCT

Downstream 100 bases:

>100_bases
TTGACATTTTAAGTTAAAAAAATGCAGCAAATTGCTGCATTTTTTATGCGTTAAGTTGTTTCTTAGCTGCTTCAACTAAT
TCAGAAAAAGCTTTTGGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 101

Protein sequence:

>102_residues
MSTVTNPVTQVADVDIKKQSIKGVFSPLLVAIDRFNSIVPVRITIAKPNAKILNGVALLILNFCKFIHVSSLTKVIPNCC
FSIYLMKLYHCKHKCQLYAIFI

Sequences:

>Translated_102_residues
MSTVTNPVTQVADVDIKKQSIKGVFSPLLVAIDRFNSIVPVRITIAKPNAKILNGVALLILNFCKFIHVSSLTKVIPNCC
FSIYLMKLYHCKHKCQLYAIFI
>Mature_101_residues
STVTNPVTQVADVDIKKQSIKGVFSPLLVAIDRFNSIVPVRITIAKPNAKILNGVALLILNFCKFIHVSSLTKVIPNCCF
SIYLMKLYHCKHKCQLYAIFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11423; Mature: 11292

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVTNPVTQVADVDIKKQSIKGVFSPLLVAIDRFNSIVPVRITIAKPNAKILNGVALLI
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHH
LNFCKFIHVSSLTKVIPNCCFSIYLMKLYHCKHKCQLYAIFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
>Mature Secondary Structure 
STVTNPVTQVADVDIKKQSIKGVFSPLLVAIDRFNSIVPVRITIAKPNAKILNGVALLI
CCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHH
LNFCKFIHVSSLTKVIPNCCFSIYLMKLYHCKHKCQLYAIFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA