| Definition | Clostridium tetani E88 chromosome, complete genome. |
|---|---|
| Accession | NC_004557 |
| Length | 2,799,251 |
Click here to switch to the map view.
The map label for this gene is 28211818
Identifier: 28211818
GI number: 28211818
Start: 2335144
End: 2335761
Strand: Direct
Name: 28211818
Synonym: CTC02214
Alternate gene names: NA
Gene position: 2335144-2335761 (Clockwise)
Preceding gene: 28211801
Following gene: 28211822
Centisome position: 83.42
GC content: 25.4
Gene sequence:
>618_bases ATGGATATCTTTAAAAAAAGAAAATTGTATTTTGTAATAGGAATTATGCTGTGCATTTCTATATTTAGTTTAACCTATTA TATATCCGCAGTTAGAATAAAAAATAATTCTAATGATAATGGCAAATTACAAGTAAGTAATGTAGATAAAAATAATAATT TAAATGTACAGGGAGAGAAAAAAAAGAAATTAAATGATGACGGCTCTATCGTACTAAAAACTAAATATACTAAAAGTGGA GATCTATTAATTGATAAAACTGAAAAGTTAAAAGATATTTCTGATCTTAAAGAAAAAACAAAAGAAGAAATAGAATCAAA ATTTAATAAAGATGGATATTCTATTGAGAGTTTTGATTCTGATAAAGCAGTTTTAATAAGGGAAATTGACAAATATTCTC CAAATAAATATGTACTTGGAATAAAGGGAGAATATTTAGCTATCTATAAAACAGATAAATTTGGAAACATGTTTATAGAA AATGAAGAAACAGATATAACAAAGAGAAAAATAGACCATCTAAAGGAACAAGACATACAACTTTTAACAAAAGGCGACAA GTACTTTCAATGTGAAACAAAGGAAGAAGCCTTAGCACGTCTAGAAGACTATGAGTAA
Upstream 100 bases:
>100_bases TATCCATTATAACTTTACCACTATAATATGGGTAATTCAAGAATAAAGATGTATATAACATTATTTAACTGTCAATAATA TCCTATAGGAGAGTGATTAA
Downstream 100 bases:
>100_bases AATCTTTATTATTATAAATTAAAACCACTTTCAATAGGGATACTATATATCCATATTGAAAGTGGTTTGATTATTTTAAT TCTAACCTTCCCATTCCTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MDIFKKRKLYFVIGIMLCISIFSLTYYISAVRIKNNSNDNGKLQVSNVDKNNNLNVQGEKKKKLNDDGSIVLKTKYTKSG DLLIDKTEKLKDISDLKEKTKEEIESKFNKDGYSIESFDSDKAVLIREIDKYSPNKYVLGIKGEYLAIYKTDKFGNMFIE NEETDITKRKIDHLKEQDIQLLTKGDKYFQCETKEEALARLEDYE
Sequences:
>Translated_205_residues MDIFKKRKLYFVIGIMLCISIFSLTYYISAVRIKNNSNDNGKLQVSNVDKNNNLNVQGEKKKKLNDDGSIVLKTKYTKSG DLLIDKTEKLKDISDLKEKTKEEIESKFNKDGYSIESFDSDKAVLIREIDKYSPNKYVLGIKGEYLAIYKTDKFGNMFIE NEETDITKRKIDHLKEQDIQLLTKGDKYFQCETKEEALARLEDYE >Mature_205_residues MDIFKKRKLYFVIGIMLCISIFSLTYYISAVRIKNNSNDNGKLQVSNVDKNNNLNVQGEKKKKLNDDGSIVLKTKYTKSG DLLIDKTEKLKDISDLKEKTKEEIESKFNKDGYSIESFDSDKAVLIREIDKYSPNKYVLGIKGEYLAIYKTDKFGNMFIE NEETDITKRKIDHLKEQDIQLLTKGDKYFQCETKEEALARLEDYE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23860; Mature: 23860
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIFKKRKLYFVIGIMLCISIFSLTYYISAVRIKNNSNDNGKLQVSNVDKNNNLNVQGEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEECCCCCCCCCCCCH KKKLNDDGSIVLKTKYTKSGDLLIDKTEKLKDISDLKEKTKEEIESKFNKDGYSIESFDS HHCCCCCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC DKAVLIREIDKYSPNKYVLGIKGEYLAIYKTDKFGNMFIENEETDITKRKIDHLKEQDIQ CCCEEEEEHHCCCCCEEEEEECCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCHH LLTKGDKYFQCETKEEALARLEDYE EEECCCCEEEECCHHHHHHHHCCCC >Mature Secondary Structure MDIFKKRKLYFVIGIMLCISIFSLTYYISAVRIKNNSNDNGKLQVSNVDKNNNLNVQGEK CCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEEEEEECCCCCCCCCCCCH KKKLNDDGSIVLKTKYTKSGDLLIDKTEKLKDISDLKEKTKEEIESKFNKDGYSIESFDS HHCCCCCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC DKAVLIREIDKYSPNKYVLGIKGEYLAIYKTDKFGNMFIENEETDITKRKIDHLKEQDIQ CCCEEEEEHHCCCCCEEEEEECCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHCHH LLTKGDKYFQCETKEEALARLEDYE EEECCCCEEEECCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA