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The map label for this gene is 28211467

Identifier: 28211467

GI number: 28211467

Start: 1937667

End: 1938368

Strand: Direct

Name: 28211467

Synonym: CTC01824

Alternate gene names: NA

Gene position: 1937667-1938368 (Clockwise)

Preceding gene: 28211458

Following gene: 28211468

Centisome position: 69.22

GC content: 24.5

Gene sequence:

>702_bases
ATGGAAAATAATATTGAAGTTAATAGCTTACAAGAACAAATAGATTCTTTACTTAAAGATGGAGAAATTCTTTTAAAAAA
TAAAAAAATTAAAAATGCTTTTGAAAAATTTAATAAAGCTCTTAATTTGAATATTAATTATCCTAAAACTTATCTTATAC
AAGGTGAAGCTTATATGCTTATATACGAAATGGATAAAGCCGAAGAGTGTATGTATAAATATTTAAACTTTTTTCCTAAT
GATAAAAGAGCATATTTAAATTTAATGAAAATTAATGATGAAAGAGGATATTTTGAAAAAGCTCTTTATTATTGTGATAA
GCTTCTTAGTATAGACAATAACAATTATAAACTGCATTTTAAAAAAGCAGATATTTTAAATATGCTAGGTAATACAGAGG
AGGCTCTATATTATTGTAATAATTGTCTAAAATTAAATCCTAATTTTTATAAAGCCCTTTGTCTTAAAGGAAGTCTCTTA
AATTCCTTAGAAAAATATGAAGAAGCTTTAGAAATTTGTTCTAAAGCTACTAATTTGGATTCATCTAAAAGTGAAGCTTA
TTTTGAAAAATCTTTAATTTATGAAAACATGAAAAATTTCAGCCTTGCTTTTTCCCTTGCGAAAAAAGCCTATGACTTAA
GCCCTGATGATGAATTATACAGATTTCAATATGTTATGATGAAAGAGATGATTCGCTGGTAA

Upstream 100 bases:

>100_bases
AATATATATAATTCAAATTATATTTTTAGGTATATGATTTGTAATATATGTCAATAATTAAGATAAACTAAAAACTTTTA
CTTATTGGAGGAGATATTTT

Downstream 100 bases:

>100_bases
CAACACACCATTTTTAAAAGTATGTGTAATAATCTACACCCTAATATTTTCCCAATAATTAAAGTAACTAAAGATATTCA
AGCTTGAATATCTTTAGTTA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MENNIEVNSLQEQIDSLLKDGEILLKNKKIKNAFEKFNKALNLNINYPKTYLIQGEAYMLIYEMDKAEECMYKYLNFFPN
DKRAYLNLMKINDERGYFEKALYYCDKLLSIDNNNYKLHFKKADILNMLGNTEEALYYCNNCLKLNPNFYKALCLKGSLL
NSLEKYEEALEICSKATNLDSSKSEAYFEKSLIYENMKNFSLAFSLAKKAYDLSPDDELYRFQYVMMKEMIRW

Sequences:

>Translated_233_residues
MENNIEVNSLQEQIDSLLKDGEILLKNKKIKNAFEKFNKALNLNINYPKTYLIQGEAYMLIYEMDKAEECMYKYLNFFPN
DKRAYLNLMKINDERGYFEKALYYCDKLLSIDNNNYKLHFKKADILNMLGNTEEALYYCNNCLKLNPNFYKALCLKGSLL
NSLEKYEEALEICSKATNLDSSKSEAYFEKSLIYENMKNFSLAFSLAKKAYDLSPDDELYRFQYVMMKEMIRW
>Mature_233_residues
MENNIEVNSLQEQIDSLLKDGEILLKNKKIKNAFEKFNKALNLNINYPKTYLIQGEAYMLIYEMDKAEECMYKYLNFFPN
DKRAYLNLMKINDERGYFEKALYYCDKLLSIDNNNYKLHFKKADILNMLGNTEEALYYCNNCLKLNPNFYKALCLKGSLL
NSLEKYEEALEICSKATNLDSSKSEAYFEKSLIYENMKNFSLAFSLAKKAYDLSPDDELYRFQYVMMKEMIRW

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 9 TPR repeats [H]

Homologues:

Organism=Drosophila melanogaster, GI17647755, Length=184, Percent_Identity=25, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24585827, Length=184, Percent_Identity=25, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24585829, Length=184, Percent_Identity=25, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 27648; Mature: 27648

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENNIEVNSLQEQIDSLLKDGEILLKNKKIKNAFEKFNKALNLNINYPKTYLIQGEAYML
CCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHEEEEEECCCEEEEEECCEEEE
IYEMDKAEECMYKYLNFFPNDKRAYLNLMKINDERGYFEKALYYCDKLLSIDNNNYKLHF
EEECCHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE
KKADILNMLGNTEEALYYCNNCLKLNPNFYKALCLKGSLLNSLEKYEEALEICSKATNLD
EHHHHHHHHCCHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSKSEAYFEKSLIYENMKNFSLAFSLAKKAYDLSPDDELYRFQYVMMKEMIRW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MENNIEVNSLQEQIDSLLKDGEILLKNKKIKNAFEKFNKALNLNINYPKTYLIQGEAYML
CCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHEEEEEECCCEEEEEECCEEEE
IYEMDKAEECMYKYLNFFPNDKRAYLNLMKINDERGYFEKALYYCDKLLSIDNNNYKLHF
EEECCHHHHHHHHHHHHCCCCHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEE
KKADILNMLGNTEEALYYCNNCLKLNPNFYKALCLKGSLLNSLEKYEEALEICSKATNLD
EHHHHHHHHCCHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSKSEAYFEKSLIYENMKNFSLAFSLAKKAYDLSPDDELYRFQYVMMKEMIRW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 9697413 [H]