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The map label for this gene is ydcN [H]

Identifier: 28211116

GI number: 28211116

Start: 1553694

End: 1554401

Strand: Direct

Name: ydcN [H]

Synonym: CTC01439

Alternate gene names: 28211116

Gene position: 1553694-1554401 (Clockwise)

Preceding gene: 28211113

Following gene: 28211127

Centisome position: 55.5

GC content: 26.13

Gene sequence:

>708_bases
ATGCAAAACAAAATTTTTCTATTTATTCTCGTTTTTCTTGTTTCATTTAAGCAATTACTATATAATAGTTTACGAACGTT
AAATATATTTAATGTTAACTTTATTTTACTTTCGTTAGTTATAATTGTCAATACCATTATAGGAGGTTATACCATAATGA
ATATAAATTCTATTATTGCAGAAAATCTTAAAACACTTCGTACTGAAAGAAATTTAAGTTTAGGTCAACTTGCTGAATTA
TCTGGTATCAGTAAAGTCATGCTATCTCAAATTGAAAAAGGTGACACTAATCCTACTATAAATACTTTATGGAAAATAGC
TAAAGGATTGAAAGTGCCTTATACATCATTACTTGAGCAAAAAAAACATGATACATATGTTATAAAGAAAAGAAATATTG
AAGCTCAATTTACTGAAGAAGGTCATTATCGAGTATATTGCTACTATACTAGTACACCTTATCGTAATTTTGAACTTTTT
CAAATTGAAATTGATGAGGGTTGTTCATATAAGTCTATAGGTCATTCTAAAAAATGCCAAGAATATATTATGGTTTTAGA
AGGTGAATTAACATTAGAAATAAACAATAAAATTTATAAACTAACTTCTGATGATTCAATAAGCTTTTCTGCCTCTAGTC
AGCATATATATATTAATAGTGGAAATGGGACTTTAAAAGCTACAATAACAAATTTTTATCCTGCCTAA

Upstream 100 bases:

>100_bases
CGCTTCTTTCCTTGTTATCATAATAATATCCTCCTTTAAAAATCACAAAATATGAATAAAAATGAATCTTTACTAAAATA
CTTAAGTTCACTATACTTAG

Downstream 100 bases:

>100_bases
TAATTAGGCAGGATATTTTAATGATATCTTAATGGGAGCTAGTAAAGCTTAAAGTATAATCTCTTCCTTCATTTCTTAAT
AAATATTTACTTCTTAACAT

Product: putative transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MQNKIFLFILVFLVSFKQLLYNSLRTLNIFNVNFILLSLVIIVNTIIGGYTIMNINSIIAENLKTLRTERNLSLGQLAEL
SGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLLEQKKHDTYVIKKRNIEAQFTEEGHYRVYCYYTSTPYRNFELF
QIEIDEGCSYKSIGHSKKCQEYIMVLEGELTLEINNKIYKLTSDDSISFSASSQHIYINSGNGTLKATITNFYPA

Sequences:

>Translated_235_residues
MQNKIFLFILVFLVSFKQLLYNSLRTLNIFNVNFILLSLVIIVNTIIGGYTIMNINSIIAENLKTLRTERNLSLGQLAEL
SGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLLEQKKHDTYVIKKRNIEAQFTEEGHYRVYCYYTSTPYRNFELF
QIEIDEGCSYKSIGHSKKCQEYIMVLEGELTLEINNKIYKLTSDDSISFSASSQHIYINSGNGTLKATITNFYPA
>Mature_235_residues
MQNKIFLFILVFLVSFKQLLYNSLRTLNIFNVNFILLSLVIIVNTIIGGYTIMNINSIIAENLKTLRTERNLSLGQLAEL
SGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLLEQKKHDTYVIKKRNIEAQFTEEGHYRVYCYYTSTPYRNFELF
QIEIDEGCSYKSIGHSKKCQEYIMVLEGELTLEINNKIYKLTSDDSISFSASSQHIYINSGNGTLKATITNFYPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=32.5581395348837, Blast_Score=109, Evalue=2e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 26916; Mature: 26916

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKIFLFILVFLVSFKQLLYNSLRTLNIFNVNFILLSLVIIVNTIIGGYTIMNINSIIA
CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
ENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLLEQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHH
KKHDTYVIKKRNIEAQFTEEGHYRVYCYYTSTPYRNFELFQIEIDEGCSYKSIGHSKKCQ
CCCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCHHHHH
EYIMVLEGELTLEINNKIYKLTSDDSISFSASSQHIYINSGNGTLKATITNFYPA
HHHEEECCEEEEEECCEEEEEECCCCEEEECCCCEEEEECCCCEEEEEEECCCCC
>Mature Secondary Structure
MQNKIFLFILVFLVSFKQLLYNSLRTLNIFNVNFILLSLVIIVNTIIGGYTIMNINSIIA
CCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHCCEEEEEHHHHHH
ENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPYTSLLEQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHH
KKHDTYVIKKRNIEAQFTEEGHYRVYCYYTSTPYRNFELFQIEIDEGCSYKSIGHSKKCQ
CCCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCCHHHHH
EYIMVLEGELTLEINNKIYKLTSDDSISFSASSQHIYINSGNGTLKATITNFYPA
HHHEEECCEEEEEECCEEEEEECCCCEEEECCCCEEEEECCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]