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The map label for this gene is yhfR [C]

Identifier: 28211069

GI number: 28211069

Start: 1503259

End: 1504029

Strand: Direct

Name: yhfR [C]

Synonym: CTC01391

Alternate gene names: 28211069

Gene position: 1503259-1504029 (Clockwise)

Preceding gene: 28211061

Following gene: 28211070

Centisome position: 53.7

GC content: 25.55

Gene sequence:

>771_bases
TTGGACAAGTTTATTTTTTATAGAAAGGTGTTTTTTATGAATGTTTTTAATATAATGGACAAACCAAAAGAATTAAAATA
TGTTACTGTATATAACCAACTCTTTAAAATGATAAATGAAGGAATCTTTGTAAAAGGAAGCAGATTACCATCAGAACCTG
AATTATCTAAAATGATAGGTGTTAGTAGAACTACATTGCGTCAAGCACTAGCTCTACTACAAGAGGATGGATTAGTAAAA
AATATTCATGGAAAAGGTAATTTTATAATAAAATCTAAAAATGAAAAGATAATTGGATTAGAAAAAATAGGTCATCCTGT
TTATAAATGTATAGATCAAAAAATTGATGTTGTGGAAATATCAATTCGTATAGAGCCTTCAACAGATTATATAGATCAAA
CTTTTGGACGTAAAACTACCGCTGTAGCTTTGATTGATAGATGGTATAAATTTAAGGATAAGGCAATAGCTTATACTTTT
ACTTTAATTCCCATTGATACTGTTTCCAATTTAGACATTGATTTAAATGATCAAGATAAAGTTTTAAAGATTTTAGAAGA
AGATATTTATGAAATATGTGATGATATATTGTTAGAACTAAAATATTCTACTTCAGGAAACTTTGCTGCTAAAAAGTATC
AACTTTCACATGAAGATCAATTTTACTTAATCCAAGAAACTTTATATAAAGGTAATAAATTTCCTATAATATCTAATAAA
CACTATTTACCTATAGAATCTAGTTCAATTAAATTTCATCCTTTAAAATAA

Upstream 100 bases:

>100_bases
ATCGTTTACATGTCAAGAGAATTTGCTAAACCTTTTTATGCATTGAAATGGAATTATAATCAAGCTATAATGAATATAAC
GATTTCATTAATGGACTTGT

Downstream 100 bases:

>100_bases
ACAATACCTGGGCAGGTTGTATGGAGATTAAATTAATTTTCGTATACCCTGCCCAAATTATTTTTATTTGGATATATTGA
TGTAACTAAATTAATTCAAT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulatory Protein; Transcriptional Regulator GntR Family; GntR Family Transcriptional Regulator; Transcription Regulator; Regulatory Protein GntR HTH

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MDKFIFYRKVFFMNVFNIMDKPKELKYVTVYNQLFKMINEGIFVKGSRLPSEPELSKMIGVSRTTLRQALALLQEDGLVK
NIHGKGNFIIKSKNEKIIGLEKIGHPVYKCIDQKIDVVEISIRIEPSTDYIDQTFGRKTTAVALIDRWYKFKDKAIAYTF
TLIPIDTVSNLDIDLNDQDKVLKILEEDIYEICDDILLELKYSTSGNFAAKKYQLSHEDQFYLIQETLYKGNKFPIISNK
HYLPIESSSIKFHPLK

Sequences:

>Translated_256_residues
MDKFIFYRKVFFMNVFNIMDKPKELKYVTVYNQLFKMINEGIFVKGSRLPSEPELSKMIGVSRTTLRQALALLQEDGLVK
NIHGKGNFIIKSKNEKIIGLEKIGHPVYKCIDQKIDVVEISIRIEPSTDYIDQTFGRKTTAVALIDRWYKFKDKAIAYTF
TLIPIDTVSNLDIDLNDQDKVLKILEEDIYEICDDILLELKYSTSGNFAAKKYQLSHEDQFYLIQETLYKGNKFPIISNK
HYLPIESSSIKFHPLK
>Mature_256_residues
MDKFIFYRKVFFMNVFNIMDKPKELKYVTVYNQLFKMINEGIFVKGSRLPSEPELSKMIGVSRTTLRQALALLQEDGLVK
NIHGKGNFIIKSKNEKIIGLEKIGHPVYKCIDQKIDVVEISIRIEPSTDYIDQTFGRKTTAVALIDRWYKFKDKAIAYTF
TLIPIDTVSNLDIDLNDQDKVLKILEEDIYEICDDILLELKYSTSGNFAAKKYQLSHEDQFYLIQETLYKGNKFPIISNK
HYLPIESSSIKFHPLK

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29782; Mature: 29782

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFIFYRKVFFMNVFNIMDKPKELKYVTVYNQLFKMINEGIFVKGSRLPSEPELSKMIG
CCCHHHHHHHHHHHHHHHHCCCHHEEEEHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHC
VSRTTLRQALALLQEDGLVKNIHGKGNFIIKSKNEKIIGLEKIGHPVYKCIDQKIDVVEI
CHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEEHHHHCCHHHHHHHCCCEEEEE
SIRIEPSTDYIDQTFGRKTTAVALIDRWYKFKDKAIAYTFTLIPIDTVSNLDIDLNDQDK
EEEEECCCCHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCEECCCCHHH
VLKILEEDIYEICDDILLELKYSTSGNFAAKKYQLSHEDQFYLIQETLYKGNKFPIISNK
HHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCEEEEEHHHHCCCCCCEECCC
HYLPIESSSIKFHPLK
EEECCCCCCEEEEECC
>Mature Secondary Structure
MDKFIFYRKVFFMNVFNIMDKPKELKYVTVYNQLFKMINEGIFVKGSRLPSEPELSKMIG
CCCHHHHHHHHHHHHHHHHCCCHHEEEEHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHC
VSRTTLRQALALLQEDGLVKNIHGKGNFIIKSKNEKIIGLEKIGHPVYKCIDQKIDVVEI
CHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCEEEHHHHCCHHHHHHHCCCEEEEE
SIRIEPSTDYIDQTFGRKTTAVALIDRWYKFKDKAIAYTFTLIPIDTVSNLDIDLNDQDK
EEEEECCCCHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCEECCCCHHH
VLKILEEDIYEICDDILLELKYSTSGNFAAKKYQLSHEDQFYLIQETLYKGNKFPIISNK
HHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCEEEEEHHHHCCCCCCEECCC
HYLPIESSSIKFHPLK
EEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA