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The map label for this gene is ydeD [C]

Identifier: 28210686

GI number: 28210686

Start: 1047217

End: 1048122

Strand: Direct

Name: ydeD [C]

Synonym: CTC00979

Alternate gene names: 28210686

Gene position: 1047217-1048122 (Clockwise)

Preceding gene: 28210683

Following gene: 28210688

Centisome position: 37.41

GC content: 25.61

Gene sequence:

>906_bases
GTGAAAGATGTAAAGAAAGCTCATTTTTTAGCAATTATTTTAATGATTTTATGGGGTATGTCTTATTTAAGTATAAAAGT
AGTAGTTCATGAAATACATCCTGTTTTATCTGCTTTTTATAGATTTTTAATAGCAGCTATTATACTATTTATATATCTAA
AAGTTAGATATCCAGAAGAGAAAGTTTTAAAAGAAGATAAAATTAAAATGGCTTTAGGCGGTTTTTTTGGAGTAGCCATG
TATTTTTTATTTGAAAATTATGCAGTGTATTTTACAACTGCTTCTAATGTAGCAATAATAATATCATCTATACCTATATT
TACGTTAATTTCTCAGAGAATTATCTTTAAAGAAAAAATAAATGTGGTAAAAGCTATAGGAGCCTCTCTTAGTATAATAG
GTATAGGTATAATATTATTATCAAAGGGAAAAGTAAGTTTATTTTCTAAAGGAACTATTGGTGATTTAATGGGAATAGGA
GCCGCTCTTTGTTGGGTGGCATATACTGTAGTTATTAGTAAACTTAAAGGAAATTATAGAAGTATAGTAATTACAACATA
CCAAACTATTTGGGGATGTATTTTTTTAAGCCCAAGTATATTTATTTTTCAACATAGTATTATGCCTTCGACAAAAGCAA
TAGCTAATTTGTTGTATCTGTCATTCTTCTGTACTTGTATTGGATATGCTATATATATTTATTGTCAAAATAAATTAGGT
GCTACAGTTATAACTACCTATATAAATCTCCAGCCTATAGTAAGTATAATAAGTGCTAAAATTTTATTAAATGAAAATAT
AAATTCAAAACAAATACTTGGAAGTGCTATAATTATTATAGGTTTATTTCTAGCTAGTAAAAGTGAAAAAATAAATAAAC
AAATTATAGAAGCATTAAAAGGATAA

Upstream 100 bases:

>100_bases
TATCATTTGCTTTTATATAATTACATATCTTATAATCTATACATATATTATAGCATATATAAGAATTAAGATTGTATAAT
TAAGATTTGGGGGGAAGAGA

Downstream 100 bases:

>100_bases
ATAAAAAAACGTCTCAAAAATGAGACGTTTTTATTATATATATCTATTTCTTTTATTTCTTCTAGTTCTTTTATTTAAAA
ATCCTATAATAGAAATTATA

Product: membrane spanning protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKDVKKAHFLAIILMILWGMSYLSIKVVVHEIHPVLSAFYRFLIAAIILFIYLKVRYPEEKVLKEDKIKMALGGFFGVAM
YFLFENYAVYFTTASNVAIIISSIPIFTLISQRIIFKEKINVVKAIGASLSIIGIGIILLSKGKVSLFSKGTIGDLMGIG
AALCWVAYTVVISKLKGNYRSIVITTYQTIWGCIFLSPSIFIFQHSIMPSTKAIANLLYLSFFCTCIGYAIYIYCQNKLG
ATVITTYINLQPIVSIISAKILLNENINSKQILGSAIIIIGLFLASKSEKINKQIIEALKG

Sequences:

>Translated_301_residues
MKDVKKAHFLAIILMILWGMSYLSIKVVVHEIHPVLSAFYRFLIAAIILFIYLKVRYPEEKVLKEDKIKMALGGFFGVAM
YFLFENYAVYFTTASNVAIIISSIPIFTLISQRIIFKEKINVVKAIGASLSIIGIGIILLSKGKVSLFSKGTIGDLMGIG
AALCWVAYTVVISKLKGNYRSIVITTYQTIWGCIFLSPSIFIFQHSIMPSTKAIANLLYLSFFCTCIGYAIYIYCQNKLG
ATVITTYINLQPIVSIISAKILLNENINSKQILGSAIIIIGLFLASKSEKINKQIIEALKG
>Mature_301_residues
MKDVKKAHFLAIILMILWGMSYLSIKVVVHEIHPVLSAFYRFLIAAIILFIYLKVRYPEEKVLKEDKIKMALGGFFGVAM
YFLFENYAVYFTTASNVAIIISSIPIFTLISQRIIFKEKINVVKAIGASLSIIGIGIILLSKGKVSLFSKGTIGDLMGIG
AALCWVAYTVVISKLKGNYRSIVITTYQTIWGCIFLSPSIFIFQHSIMPSTKAIANLLYLSFFCTCIGYAIYIYCQNKLG
ATVITTYINLQPIVSIISAKILLNENINSKQILGSAIIIIGLFLASKSEKINKQIIEALKG

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI87081929, Length=289, Percent_Identity=22.8373702422145, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789575, Length=276, Percent_Identity=25.7246376811594, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33440; Mature: 33440

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDVKKAHFLAIILMILWGMSYLSIKVVVHEIHPVLSAFYRFLIAAIILFIYLKVRYPEE
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KVLKEDKIKMALGGFFGVAMYFLFENYAVYFTTASNVAIIISSIPIFTLISQRIIFKEKI
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHH
NVVKAIGASLSIIGIGIILLSKGKVSLFSKGTIGDLMGIGAALCWVAYTVVISKLKGNYR
HHHHHHCCCHHHHHEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
SIVITTYQTIWGCIFLSPSIFIFQHSIMPSTKAIANLLYLSFFCTCIGYAIYIYCQNKLG
EEEEEEHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
ATVITTYINLQPIVSIISAKILLNENINSKQILGSAIIIIGLFLASKSEKINKQIIEALK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
G
C
>Mature Secondary Structure
MKDVKKAHFLAIILMILWGMSYLSIKVVVHEIHPVLSAFYRFLIAAIILFIYLKVRYPEE
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KVLKEDKIKMALGGFFGVAMYFLFENYAVYFTTASNVAIIISSIPIFTLISQRIIFKEKI
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHH
NVVKAIGASLSIIGIGIILLSKGKVSLFSKGTIGDLMGIGAALCWVAYTVVISKLKGNYR
HHHHHHCCCHHHHHEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCE
SIVITTYQTIWGCIFLSPSIFIFQHSIMPSTKAIANLLYLSFFCTCIGYAIYIYCQNKLG
EEEEEEHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
ATVITTYINLQPIVSIISAKILLNENINSKQILGSAIIIIGLFLASKSEKINKQIIEALK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]