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The map label for this gene is deoR [H]

Identifier: 28210654

GI number: 28210654

Start: 1006326

End: 1007291

Strand: Direct

Name: deoR [H]

Synonym: CTC00943

Alternate gene names: 28210654

Gene position: 1006326-1007291 (Clockwise)

Preceding gene: 28210653

Following gene: 28210655

Centisome position: 35.95

GC content: 29.5

Gene sequence:

>966_bases
GTGAGCAAATGTAACATAAGGAGGGGTGGAATGTCCAATTGTAATAATCGAGAATTAATAAAGGTCGCATACTATTATTA
TAAAAAAGGTCTAATACAGGCTGAGATAGCAGAAAAAATGGGAATGTCTAGACAAAAAGTTAATAGACTATTAAAAAAAG
CCCTTAAGGAAAATATAGTTCAAATCCAAATTATAGATATAGACAAATATAATTTGGAATTAGAGACTAAATTAGAAGAA
AAATTTAAGTTGAAACAAACTGTAGTTATTTCGGCTATAGATAAGAAAAATATAACTGGTAGTCTGGGGATAGCAGGGGC
TGAATATTTAGAAGAATTACTTGTAAAAGATGATGTTATAGGAGTAACATGGGGCAAAACATTATCAGAGATAGCAAATA
GATTATCATATAATAATAAATTACAAACATCAGTTGTTCAATTAATAGGAGGAATGGATATAGCATTTACTGCTTTAAAG
CCTGATGAAATTACTAGAACCATTGCAGAAAAATTGGGAGGAAAACCGTATTTATTATATGCTCCTGCTATTGTAGAAAA
TAAGGAAACTAAATCTGCAATTATGTCTGATGAAAGTTTAAAAACTACTTTTAAAAACATGGAGAAATGTAACGTTATAA
TAGCTGGTATAGGAGAATTAAATGCAGATAGCACCTTATATAAACAAAAATATTTTAATGAAAAATATATAGAACATCTC
CTATCTTGCCAATGTGTTGGGGATATTGGATTTAGGTGGTATAACGAAGAAGGTAAAATTGTAGAGCATGACTATAAGGA
TAAAACTATAGGATATGACATTCTTGAAAACAAAAGCAATGCATTAGTTATAGGAATAGCAGGAGGAGTAAGTAAGTATG
AAGCTATTTTAGGAGCATTAAAAGGAAATTATTTGGATGTTTTAATTACTGATAGTGATACGGCTAAGAGATTAATTGAA
GAATAA

Upstream 100 bases:

>100_bases
CCTGATATTATTAGAAAATTATAAAAATACTGAAAAATATTATTGAATTATATGGGGTTAAATGATATACTTTTATTAAA
TCATTACAAAATATAACAAA

Downstream 100 bases:

>100_bases
ATAAATACTAAGAAAGAAGGGATATATTTGATATTTAAAGAAGAAAGAGAATTAGTTATGCAATACGGTAGAAAGTTAAT
TGAAAGTAATTTAACTAAAG

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MSKCNIRRGGMSNCNNRELIKVAYYYYKKGLIQAEIAEKMGMSRQKVNRLLKKALKENIVQIQIIDIDKYNLELETKLEE
KFKLKQTVVISAIDKKNITGSLGIAGAEYLEELLVKDDVIGVTWGKTLSEIANRLSYNNKLQTSVVQLIGGMDIAFTALK
PDEITRTIAEKLGGKPYLLYAPAIVENKETKSAIMSDESLKTTFKNMEKCNVIIAGIGELNADSTLYKQKYFNEKYIEHL
LSCQCVGDIGFRWYNEEGKIVEHDYKDKTIGYDILENKSNALVIGIAGGVSKYEAILGALKGNYLDVLITDSDTAKRLIE
E

Sequences:

>Translated_321_residues
MSKCNIRRGGMSNCNNRELIKVAYYYYKKGLIQAEIAEKMGMSRQKVNRLLKKALKENIVQIQIIDIDKYNLELETKLEE
KFKLKQTVVISAIDKKNITGSLGIAGAEYLEELLVKDDVIGVTWGKTLSEIANRLSYNNKLQTSVVQLIGGMDIAFTALK
PDEITRTIAEKLGGKPYLLYAPAIVENKETKSAIMSDESLKTTFKNMEKCNVIIAGIGELNADSTLYKQKYFNEKYIEHL
LSCQCVGDIGFRWYNEEGKIVEHDYKDKTIGYDILENKSNALVIGIAGGVSKYEAILGALKGNYLDVLITDSDTAKRLIE
E
>Mature_320_residues
SKCNIRRGGMSNCNNRELIKVAYYYYKKGLIQAEIAEKMGMSRQKVNRLLKKALKENIVQIQIIDIDKYNLELETKLEEK
FKLKQTVVISAIDKKNITGSLGIAGAEYLEELLVKDDVIGVTWGKTLSEIANRLSYNNKLQTSVVQLIGGMDIAFTALKP
DEITRTIAEKLGGKPYLLYAPAIVENKETKSAIMSDESLKTTFKNMEKCNVIIAGIGELNADSTLYKQKYFNEKYIEHLL
SCQCVGDIGFRWYNEEGKIVEHDYKDKTIGYDILENKSNALVIGIAGGVSKYEAILGALKGNYLDVLITDSDTAKRLIEE

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=314, Percent_Identity=27.7070063694268, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI87082414, Length=317, Percent_Identity=26.4984227129338, Blast_Score=127, Evalue=8e-31,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36080; Mature: 35949

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKCNIRRGGMSNCNNRELIKVAYYYYKKGLIQAEIAEKMGMSRQKVNRLLKKALKENIV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
QIQIIDIDKYNLELETKLEEKFKLKQTVVISAIDKKNITGSLGIAGAEYLEELLVKDDVI
EEEEEEECCCCEEEHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEE
GVTWGKTLSEIANRLSYNNKLQTSVVQLIGGMDIAFTALKPDEITRTIAEKLGGKPYLLY
EEEHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEE
APAIVENKETKSAIMSDESLKTTFKNMEKCNVIIAGIGELNADSTLYKQKYFNEKYIEHL
CCHHHCCCHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHCCHHHHHHH
LSCQCVGDIGFRWYNEEGKIVEHDYKDKTIGYDILENKSNALVIGIAGGVSKYEAILGAL
HHHHEEECCCEEEECCCCCEEECCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHH
KGNYLDVLITDSDTAKRLIEE
CCCEEEEEEECCHHHHHHHCC
>Mature Secondary Structure 
SKCNIRRGGMSNCNNRELIKVAYYYYKKGLIQAEIAEKMGMSRQKVNRLLKKALKENIV
CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
QIQIIDIDKYNLELETKLEEKFKLKQTVVISAIDKKNITGSLGIAGAEYLEELLVKDDVI
EEEEEEECCCCEEEHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEE
GVTWGKTLSEIANRLSYNNKLQTSVVQLIGGMDIAFTALKPDEITRTIAEKLGGKPYLLY
EEEHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEE
APAIVENKETKSAIMSDESLKTTFKNMEKCNVIIAGIGELNADSTLYKQKYFNEKYIEHL
CCHHHCCCHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHCCHHHHHHH
LSCQCVGDIGFRWYNEEGKIVEHDYKDKTIGYDILENKSNALVIGIAGGVSKYEAILGAL
HHHHEEECCCEEEECCCCCEEECCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHH
KGNYLDVLITDSDTAKRLIEE
CCCEEEEEEECCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]