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The map label for this gene is yhaM [H]

Identifier: 28210381

GI number: 28210381

Start: 672268

End: 672957

Strand: Direct

Name: yhaM [H]

Synonym: CTC00655

Alternate gene names: 28210381

Gene position: 672268-672957 (Clockwise)

Preceding gene: 28210380

Following gene: 28210382

Centisome position: 24.02

GC content: 30.72

Gene sequence:

>690_bases
TTGAAGGTAGAATCTTTTTCAAAAAAAGAGGAATTTAAAATAGAAGATTACCTTCCTTCTGTAAAAAGACCCATTGAAGA
TATACTTAAAGAAATAGAAGATATATCAAAAGAAGAGTTTAAAAGTGAAGAAATAATAACTTTAGATAAATATTTCTTTG
GAAATAATGAGTTTTTACATAAATTTAAAAGGGGTATAGGAGGAGCAAGACAGCATCACAATTACATAGGAGGGTTAGCA
GAGCATACTTTAAACGTAATGTATATAGCAAAAATTTTAGCCTATAGATATAATTGTAGAAATAAAGAAATAGCAATACT
TGCAGCTAAACTTCATGACATAGGAAAAATAAAAGAGTATTTTGTAGAAGGACCTTTTTCTTACACTCTAAGGGGAGAAA
TGGAAGGACATATTGTAATGGGAATAACTATGTTAGAAGAGGCCTTTAGGGAAAATCCTGAGCTATATAGTGAAGAATTT
AAAGAAAGAATGAAGGGATGCGTAGTTCAGCATCATGGAAAATTAGAATATGGATCTCCTAAAGCACCAAATACAGAGGA
AGCTTATATAGTTCACTATGCTGATTACGTAGATGCCACAATGAATAAAATATCTCAAATAAAAGAAGGACTTGAGCCAA
ATACATGGTCAGATTATGATAGGAGAATTGGAGGAAAACTGTATATATAG

Upstream 100 bases:

>100_bases
AGGAGATAATACAGGTGAAGTTAAAGCATCTATTATAGAAGGAGAGTATGAACTTGAAAAAGGGGATGTAATAGAATGTG
AAGCTATTTCTGAAACCATA

Downstream 100 bases:

>100_bases
GTGAATATGCTTATATTTAGTTATAAAAATAATATTGAAGTGGAGATGAAATAAAAAATGAAAAGGCACAATAGAATTAT
TTCTACACTGCTTTTCTTAG

Product: putative CMP-binding factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKVESFSKKEEFKIEDYLPSVKRPIEDILKEIEDISKEEFKSEEIITLDKYFFGNNEFLHKFKRGIGGARQHHNYIGGLA
EHTLNVMYIAKILAYRYNCRNKEIAILAAKLHDIGKIKEYFVEGPFSYTLRGEMEGHIVMGITMLEEAFRENPELYSEEF
KERMKGCVVQHHGKLEYGSPKAPNTEEAYIVHYADYVDATMNKISQIKEGLEPNTWSDYDRRIGGKLYI

Sequences:

>Translated_229_residues
MKVESFSKKEEFKIEDYLPSVKRPIEDILKEIEDISKEEFKSEEIITLDKYFFGNNEFLHKFKRGIGGARQHHNYIGGLA
EHTLNVMYIAKILAYRYNCRNKEIAILAAKLHDIGKIKEYFVEGPFSYTLRGEMEGHIVMGITMLEEAFRENPELYSEEF
KERMKGCVVQHHGKLEYGSPKAPNTEEAYIVHYADYVDATMNKISQIKEGLEPNTWSDYDRRIGGKLYI
>Mature_229_residues
MKVESFSKKEEFKIEDYLPSVKRPIEDILKEIEDISKEEFKSEEIITLDKYFFGNNEFLHKFKRGIGGARQHHNYIGGLA
EHTLNVMYIAKILAYRYNCRNKEIAILAAKLHDIGKIKEYFVEGPFSYTLRGEMEGHIVMGITMLEEAFRENPELYSEEF
KERMKGCVVQHHGKLEYGSPKAPNTEEAYIVHYADYVDATMNKISQIKEGLEPNTWSDYDRRIGGKLYI

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 26735; Mature: 26735

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVESFSKKEEFKIEDYLPSVKRPIEDILKEIEDISKEEFKSEEIITLDKYFFGNNEFLH
CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHH
KFKRGIGGARQHHNYIGGLAEHTLNVMYIAKILAYRYNCRNKEIAILAAKLHDIGKIKEY
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
FVEGPFSYTLRGEMEGHIVMGITMLEEAFRENPELYSEEFKERMKGCVVQHHGKLEYGSP
HHCCCCEEEEECCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
KAPNTEEAYIVHYADYVDATMNKISQIKEGLEPNTWSDYDRRIGGKLYI
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure
MKVESFSKKEEFKIEDYLPSVKRPIEDILKEIEDISKEEFKSEEIITLDKYFFGNNEFLH
CCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCHHHHH
KFKRGIGGARQHHNYIGGLAEHTLNVMYIAKILAYRYNCRNKEIAILAAKLHDIGKIKEY
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHH
FVEGPFSYTLRGEMEGHIVMGITMLEEAFRENPELYSEEFKERMKGCVVQHHGKLEYGSP
HHCCCCEEEEECCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
KAPNTEEAYIVHYADYVDATMNKISQIKEGLEPNTWSDYDRRIGGKLYI
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA