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The map label for this gene is ydcM [C]

Identifier: 28210354

GI number: 28210354

Start: 643663

End: 644205

Strand: Direct

Name: ydcM [C]

Synonym: CTC00623

Alternate gene names: 28210354

Gene position: 643663-644205 (Clockwise)

Preceding gene: 28210353

Following gene: 28210355

Centisome position: 22.99

GC content: 29.65

Gene sequence:

>543_bases
ATGGGATTGAAAGAATTTGCAATATGTTCTGATGGATATAGAGAACCTAATCCAAAACATCTTAGAAGGTCTGAAAAGAG
ATTGGGGAAACTTCAAAAAGATTTATCACGAAAACAAAAATGTAGTAACAATAGAAAAAAAGCAAGGTTAAAAGTTGCTA
AACTACATGAGAAAATAGCTAATCAAAGAGCAGATTTCTTAAATAAGTTATCAATTAAACTAATTAGAGAAAACCAATCT
ATAGTCATTGAGGACTTGAAAGTTAAGAATATGCAACAAAATCATAAATTAGCTAAAGCTATAAGTGAAGCTAGTTGGTC
AGAATTTAGACGGATGTTAGAATATAAAGCTAGTTGGTATGGTAGAAATATAATTATAGCACCTTCCAATTATGCTAGTA
GTCAGTTATGTTCTGAATGCGGATATAAAAATGAAGATGTAAAAAATCTAGCACTTAGAGAATGGATATGTCCTAATTGT
GGAGTACACCATGACAGAGATATAAATGCAAGTAAAAATCTACTGAAATTATTAGCTATATAA

Upstream 100 bases:

>100_bases
CACTATATCACAAGTACCAAGTGGAAAATATTATATATGAATTTTAGTTGATACAGAAAATTTTGTATTACCTAAAATTG
ATAAAAAAATAGGTATTGAT

Downstream 100 bases:

>100_bases
TTTTGGTAATAAGCGAGGTTGGTTCGACCTTTTGAGCGTGGATAAACTTGCTACAGTAGTAGTATTGACCACGAAGCCCT
CACTTCAACGGAGTAAGTGG

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MGLKEFAICSDGYREPNPKHLRRSEKRLGKLQKDLSRKQKCSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQS
IVIEDLKVKNMQQNHKLAKAISEASWSEFRRMLEYKASWYGRNIIIAPSNYASSQLCSECGYKNEDVKNLALREWICPNC
GVHHDRDINASKNLLKLLAI

Sequences:

>Translated_180_residues
MGLKEFAICSDGYREPNPKHLRRSEKRLGKLQKDLSRKQKCSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQS
IVIEDLKVKNMQQNHKLAKAISEASWSEFRRMLEYKASWYGRNIIIAPSNYASSQLCSECGYKNEDVKNLALREWICPNC
GVHHDRDINASKNLLKLLAI
>Mature_179_residues
GLKEFAICSDGYREPNPKHLRRSEKRLGKLQKDLSRKQKCSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQSI
VIEDLKVKNMQQNHKLAKAISEASWSEFRRMLEYKASWYGRNIIIAPSNYASSQLCSECGYKNEDVKNLALREWICPNCG
VHHDRDINASKNLLKLLAI

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=189, Percent_Identity=33.8624338624339, Blast_Score=108, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 20893; Mature: 20761

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKEFAICSDGYREPNPKHLRRSEKRLGKLQKDLSRKQKCSNNRKKARLKVAKLHEKIA
CCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NQRADFLNKLSIKLIRENQSIVIEDLKVKNMQQNHKLAKAISEASWSEFRRMLEYKASWY
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GRNIIIAPSNYASSQLCSECGYKNEDVKNLALREWICPNCGVHHDRDINASKNLLKLLAI
CCEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
GLKEFAICSDGYREPNPKHLRRSEKRLGKLQKDLSRKQKCSNNRKKARLKVAKLHEKIA
CCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
NQRADFLNKLSIKLIRENQSIVIEDLKVKNMQQNHKLAKAISEASWSEFRRMLEYKASWY
HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
GRNIIIAPSNYASSQLCSECGYKNEDVKNLALREWICPNCGVHHDRDINASKNLLKLLAI
CCEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]