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The map label for this gene is ytqB [H]

Identifier: 28210208

GI number: 28210208

Start: 453935

End: 454513

Strand: Direct

Name: ytqB [H]

Synonym: CTC00455

Alternate gene names: 28210208

Gene position: 453935-454513 (Clockwise)

Preceding gene: 28210207

Following gene: 28210209

Centisome position: 16.22

GC content: 27.98

Gene sequence:

>579_bases
ATGAGATACATGGAAGAACTATTTTTTACAAATGCAGTTAACATATCTAAAGATGTATGTAAAAATAAGTTAAAAAAAGG
TGACATAGCAGTGGATGCTACTATGGGGAATGGCAACGATACTCTTTTTTTATGTAAATTAGTAGAAGAAGAGGGTAAAG
TGTATTCCTTTGACATACAAATGGAAGCTCTAAAGAGTACTGAAAAGAAACTATACCAAAATAATATACATTGGGCAGAA
TTAATATTAGATGGTCATGAAAATATGGACAAGTATCTAAAAGAAGAGCCTAAAATAATATTATTTAACTTGGGATATTT
ACCTGGAAATTCTAAGGAAGTAACTACTAAAAAAGATACTACTTTAGAAGCGGTGAAAAAATCCTTAGATCTTATAAAAA
AAGAAGGAGTGATAATTTTAGTAATATATCCTGGACATGAAGAAGGTATGTTAGAAAAAAAAGCATTAATAGATTTCTGT
AAAGGAATATGTCAAAAACAATTTAATGTGATAAAACTGCAATTCGTCAATCAAATAAATAATCCACCAATGATGATTTG
TATAGAAAAAAGAAAGTAA

Upstream 100 bases:

>100_bases
GATAAGTGTCTTTAAAAAAATCTTGAGAACTTATAATAAAAATTGTAAACTGTAACTATGCTATTTAAGTATACAGAAAA
TTATATAAATAAAAAGGTAG

Downstream 100 bases:

>100_bases
GCAGGGTTTTAAGTATTAAGGAGGAAAAAATGTATAAACGTATGTTGAAGGAGCTTATTGAGATAGAGGAGATACAAAAT
CTTATGGAAAAGCTGTATTC

Product: putative rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MRYMEELFFTNAVNISKDVCKNKLKKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQMEALKSTEKKLYQNNIHWAE
LILDGHENMDKYLKEEPKIILFNLGYLPGNSKEVTTKKDTTLEAVKKSLDLIKKEGVIILVIYPGHEEGMLEKKALIDFC
KGICQKQFNVIKLQFVNQINNPPMMICIEKRK

Sequences:

>Translated_192_residues
MRYMEELFFTNAVNISKDVCKNKLKKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQMEALKSTEKKLYQNNIHWAE
LILDGHENMDKYLKEEPKIILFNLGYLPGNSKEVTTKKDTTLEAVKKSLDLIKKEGVIILVIYPGHEEGMLEKKALIDFC
KGICQKQFNVIKLQFVNQINNPPMMICIEKRK
>Mature_192_residues
MRYMEELFFTNAVNISKDVCKNKLKKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQMEALKSTEKKLYQNNIHWAE
LILDGHENMDKYLKEEPKIILFNLGYLPGNSKEVTTKKDTTLEAVKKSLDLIKKEGVIILVIYPGHEEGMLEKKALIDFC
KGICQKQFNVIKLQFVNQINNPPMMICIEKRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010719 [H]

Pfam domain/function: PF06962 rRNA_methylase [H]

EC number: NA

Molecular weight: Translated: 22084; Mature: 22084

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYMEELFFTNAVNISKDVCKNKLKKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQ
CCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEH
MEALKSTEKKLYQNNIHWAELILDGHENMDKYLKEEPKIILFNLGYLPGNSKEVTTKKDT
HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCEEECCCCH
TLEAVKKSLDLIKKEGVIILVIYPGHEEGMLEKKALIDFCKGICQKQFNVIKLQFVNQIN
HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEHHCC
NPPMMICIEKRK
CCCEEEEEECCC
>Mature Secondary Structure
MRYMEELFFTNAVNISKDVCKNKLKKGDIAVDATMGNGNDTLFLCKLVEEEGKVYSFDIQ
CCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEH
MEALKSTEKKLYQNNIHWAELILDGHENMDKYLKEEPKIILFNLGYLPGNSKEVTTKKDT
HHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCEEEEEECCCCCCCCEEECCCCH
TLEAVKKSLDLIKKEGVIILVIYPGHEEGMLEKKALIDFCKGICQKQFNVIKLQFVNQIN
HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEHHCC
NPPMMICIEKRK
CCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]