Definition Clostridium tetani E88 chromosome, complete genome.
Accession NC_004557
Length 2,799,251

Click here to switch to the map view.

The map label for this gene is 28210195

Identifier: 28210195

GI number: 28210195

Start: 439279

End: 439731

Strand: Direct

Name: 28210195

Synonym: CTC00442

Alternate gene names: NA

Gene position: 439279-439731 (Clockwise)

Preceding gene: 28210192

Following gene: 28210196

Centisome position: 15.69

GC content: 34.0

Gene sequence:

>453_bases
ATGAAAAAGAAAATTCAGATAGATGAATTAACTGTAAGACAACAAACTTGTGATCCAATAGATGCAGAACCTTGTGAGCC
GGTTAATATAGATTCTTGTACTACTTGTACAAAAATAGATCTTGGAGATGTAGACCCAACAAATCCTGGATTATTAATAG
ATGTTTCTGCAACTATCAGAAATTTATGTCCTAATAGACCTGTTTCAGTAGCGGCTGTATTATGTGAAAGAGTAGCAAAT
CAAGATATAGTTAGAGCAGTTCAAGTTCTTGAGGATGAAGCAGAGTGTCCAACAGGTCAACAATGTTTCTGTGCAGATTT
AGATGTAAACTTCACTTTTGCAATTGCACAAGCATGTGATCCACAAGGAGATGACAGAGTATTTAAAGCAAGAATTATTA
CACATTATTTGAATCCAGAATGTTGTCAATGTAATTGTCCAGAAAATGATTAA

Upstream 100 bases:

>100_bases
TATTAATAATTCTTAAAAAATCTTGTTGTAGTGAAGACTGTTGTTAATCTTTACTACAATATCAAACTTTAAAAATAAAA
ACGTGGGGTGTGATTTATAA

Downstream 100 bases:

>100_bases
TAAAGTATAACATGGAGGTTGTCCGAAAGGACACCTCTTTTTTAATGCACAGCATTATTTAGTTCCTAGCTTTACTCTGA
AAAAATCTTAATTTAAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MKKKIQIDELTVRQQTCDPIDAEPCEPVNIDSCTTCTKIDLGDVDPTNPGLLIDVSATIRNLCPNRPVSVAAVLCERVAN
QDIVRAVQVLEDEAECPTGQQCFCADLDVNFTFAIAQACDPQGDDRVFKARIITHYLNPECCQCNCPEND

Sequences:

>Translated_150_residues
MKKKIQIDELTVRQQTCDPIDAEPCEPVNIDSCTTCTKIDLGDVDPTNPGLLIDVSATIRNLCPNRPVSVAAVLCERVAN
QDIVRAVQVLEDEAECPTGQQCFCADLDVNFTFAIAQACDPQGDDRVFKARIITHYLNPECCQCNCPEND
>Mature_150_residues
MKKKIQIDELTVRQQTCDPIDAEPCEPVNIDSCTTCTKIDLGDVDPTNPGLLIDVSATIRNLCPNRPVSVAAVLCERVAN
QDIVRAVQVLEDEAECPTGQQCFCADLDVNFTFAIAQACDPQGDDRVFKARIITHYLNPECCQCNCPEND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16502; Mature: 16502

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
9.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
10.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKIQIDELTVRQQTCDPIDAEPCEPVNIDSCTTCTKIDLGDVDPTNPGLLIDVSATIR
CCCCCCCHHEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECHHHHH
NLCPNRPVSVAAVLCERVANQDIVRAVQVLEDEAECPTGQQCFCADLDVNFTFAIAQACD
HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCC
PQGDDRVFKARIITHYLNPECCQCNCPEND
CCCCCHHHHHHHHHHHCCCCCEECCCCCCC
>Mature Secondary Structure
MKKKIQIDELTVRQQTCDPIDAEPCEPVNIDSCTTCTKIDLGDVDPTNPGLLIDVSATIR
CCCCCCCHHEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECHHHHH
NLCPNRPVSVAAVLCERVANQDIVRAVQVLEDEAECPTGQQCFCADLDVNFTFAIAQACD
HCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCC
PQGDDRVFKARIITHYLNPECCQCNCPEND
CCCCCHHHHHHHHHHHCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA