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The map label for this gene is ydcM [C]

Identifier: 28210119

GI number: 28210119

Start: 349604

End: 350593

Strand: Direct

Name: ydcM [C]

Synonym: CTC00363

Alternate gene names: 28210119

Gene position: 349604-350593 (Clockwise)

Preceding gene: 28210118

Following gene: 28210120

Centisome position: 12.49

GC content: 27.47

Gene sequence:

>990_bases
ATGTTGGCTGATAGAATTGAATCCTATAAGGAAAATAAAGATTTAGACATTAAGCAAATTAAATATCCTACACCAGCACA
ATATAAAAAAGAGTTTGAATGGCTTAAAGAGCTTGATAGTTTAGCTTTAGCTAATGCACAACTAAATTTAGATAAAGCAT
ATAAAAACTTTTTCAGAGATAAATCTGTTGGGTTTCCTAAATTCAAGAAGAAAACTAATACTAATAGCTATACAACAAAT
AATCAGAATGGTACTGTATCCTTAGAAAATGGATATATAAAAGTTCCTAAATTAAAATCTAAGATTAAAGTAAAACAACA
TAGACAATTTACAGGTAAAATTAAATCCTGTACGATATCTAAAACTCCTACAAATAAATATTATGTATCCATTTTAGTAG
ATACTGAAAATTTTATATTACCTAAAATTGATAAAAAAATAGGTATAGACTTAGGAATAAAAGAATTTGCTATAACAAGT
GATGGAGAATTTTTTAGTAATCCAAAGTGGCTAAGAAGATCTGAAAAGAGATTAAGAAAATTACAAAAGGATTTATCAAG
AAAGAAAAAAGGTAGTAATAATAGAAAAAAAGCAAGGTTAAAAGTTGCTAAACTACATGAGAAAATAGCTAATCAAAGAG
CAGATTTCTTAAATAAGTTATCAATTAAACTGATTAGAGAAAACCAATCTATAGTCATTGAGGACTTGAAAGTTAAGAAT
ATGCAACAAAATCATAAGCTAGCTAAAGCTATAAGTGAAGCTAGTTGGTCAGAATTTAGACGGATGTTAGAATATAAAGC
TAGTTGGTATGGTAGAAAGATAATTATAGCACCTTTCAATTATGCTAGTAGTCAGTTATGTTCTGAATGCGGATATAAAA
ATGAAGATGTAAAAAATCTAGCTCTTAGAGAATGGATATGTCCTAATTGTGGAGTACACCATGACAGGGATATAAATGCA
AGTAAAAATCTACTGAAATTAGCTATATAA

Upstream 100 bases:

>100_bases
GGATATGTTAAAAGCTTATAAATATAGGATTTATCCAAATAAAGAATAAAAATTATATTTAGCTAAAACTTTTGGTTGCA
CTAGATTTATCTATAATAAG

Downstream 100 bases:

>100_bases
TTTTGGTAATAAGCGAGGTTGGTTCAACCTTTTGAGCGTGGGTAAACTTGCTACAGTAGTAGTATTGACCACGAAGCCCT
CACTTCAACGGAGTAAGTGA

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLADRIESYKENKDLDIKQIKYPTPAQYKKEFEWLKELDSLALANAQLNLDKAYKNFFRDKSVGFPKFKKKTNTNSYTTN
NQNGTVSLENGYIKVPKLKSKIKVKQHRQFTGKIKSCTISKTPTNKYYVSILVDTENFILPKIDKKIGIDLGIKEFAITS
DGEFFSNPKWLRRSEKRLRKLQKDLSRKKKGSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQSIVIEDLKVKN
MQQNHKLAKAISEASWSEFRRMLEYKASWYGRKIIIAPFNYASSQLCSECGYKNEDVKNLALREWICPNCGVHHDRDINA
SKNLLKLAI

Sequences:

>Translated_329_residues
MLADRIESYKENKDLDIKQIKYPTPAQYKKEFEWLKELDSLALANAQLNLDKAYKNFFRDKSVGFPKFKKKTNTNSYTTN
NQNGTVSLENGYIKVPKLKSKIKVKQHRQFTGKIKSCTISKTPTNKYYVSILVDTENFILPKIDKKIGIDLGIKEFAITS
DGEFFSNPKWLRRSEKRLRKLQKDLSRKKKGSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQSIVIEDLKVKN
MQQNHKLAKAISEASWSEFRRMLEYKASWYGRKIIIAPFNYASSQLCSECGYKNEDVKNLALREWICPNCGVHHDRDINA
SKNLLKLAI
>Mature_329_residues
MLADRIESYKENKDLDIKQIKYPTPAQYKKEFEWLKELDSLALANAQLNLDKAYKNFFRDKSVGFPKFKKKTNTNSYTTN
NQNGTVSLENGYIKVPKLKSKIKVKQHRQFTGKIKSCTISKTPTNKYYVSILVDTENFILPKIDKKIGIDLGIKEFAITS
DGEFFSNPKWLRRSEKRLRKLQKDLSRKKKGSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQSIVIEDLKVKN
MQQNHKLAKAISEASWSEFRRMLEYKASWYGRKIIIAPFNYASSQLCSECGYKNEDVKNLALREWICPNCGVHHDRDINA
SKNLLKLAI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=338, Percent_Identity=33.4319526627219, Blast_Score=172, Evalue=2e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 38302; Mature: 38302

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLADRIESYKENKDLDIKQIKYPTPAQYKKEFEWLKELDSLALANAQLNLDKAYKNFFRD
CCHHHHHHHHCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
KSVGFPKFKKKTNTNSYTTNNQNGTVSLENGYIKVPKLKSKIKVKQHRQFTGKIKSCTIS
CCCCCCCHHCCCCCCCCEECCCCCEEEECCCEEECCCHHHHHHHHHHHHHHCCHHEEEEE
KTPTNKYYVSILVDTENFILPKIDKKIGIDLGIKEFAITSDGEFFSNPKWLRRSEKRLRK
CCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHH
LQKDLSRKKKGSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQSIVIEDLKVKN
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEHHHHHH
MQQNHKLAKAISEASWSEFRRMLEYKASWYGRKIIIAPFNYASSQLCSECGYKNEDVKNL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHH
ALREWICPNCGVHHDRDINASKNLLKLAI
HHHHHCCCCCCCCCCCCCCCCCCHHEECC
>Mature Secondary Structure
MLADRIESYKENKDLDIKQIKYPTPAQYKKEFEWLKELDSLALANAQLNLDKAYKNFFRD
CCHHHHHHHHCCCCCCHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
KSVGFPKFKKKTNTNSYTTNNQNGTVSLENGYIKVPKLKSKIKVKQHRQFTGKIKSCTIS
CCCCCCCHHCCCCCCCCEECCCCCEEEECCCEEECCCHHHHHHHHHHHHHHCCHHEEEEE
KTPTNKYYVSILVDTENFILPKIDKKIGIDLGIKEFAITSDGEFFSNPKWLRRSEKRLRK
CCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHH
LQKDLSRKKKGSNNRKKARLKVAKLHEKIANQRADFLNKLSIKLIRENQSIVIEDLKVKN
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEHHHHHH
MQQNHKLAKAISEASWSEFRRMLEYKASWYGRKIIIAPFNYASSQLCSECGYKNEDVKNL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCHHHHH
ALREWICPNCGVHHDRDINASKNLLKLAI
HHHHHCCCCCCCCCCCCCCCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]