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The map label for this gene is yabF [H]

Identifier: 28210012

GI number: 28210012

Start: 215620

End: 216207

Strand: Direct

Name: yabF [H]

Synonym: CTC00246

Alternate gene names: 28210012

Gene position: 215620-216207 (Clockwise)

Preceding gene: 28210011

Following gene: 28210013

Centisome position: 7.7

GC content: 30.95

Gene sequence:

>588_bases
TTGTACATAAGTTTAGGAGATGGTTTTGTAATGATTAAAGAGGTTATAGTAGTAGAAGGCAGAGATGATATAACTGCGGT
AAAAAGAGCAGTAGATGCAGAGGTTATTGCTGTAGGTGGTTTTGGTATAAATGCAAAAGTTATAAATAGAATAAAAGAAG
CACAAAAAAGGCAAGGGGTAATTGTGTTTACAGATCCTGATTTTGCAGGTGAAAAAATAAGAAAAATTATATCAAAAAGA
GTTGAAGGAGTAAGGCATGCTTATATATCTAAGGGAGAAGGCTACAAAGATGGAGATATTGGAGTTGAAAATGCATCACC
TAAAGCTATAATAAGTGCTTTAAATTCTGCAAAGTGTAATGTTAAAATAAAAAGAGAAGAGTTTTCAATACAAGATATGA
TGGTATATGGATTAAGTGGAGCTACGGATTCTAAGGAAAGAAGAGATAAACTTGCTAAGGTTTTAAGAATAGGATATTGT
AATACTTCTCAATTTCTAACTAGGTTAAATAATTATGGAATAACAAGAGAAGAGTTTCTAAATGGAATAAGAAAAATAGA
TGAGGAGAGTAGTTATGGGAAAAAATAA

Upstream 100 bases:

>100_bases
TTCTAGCAATAGTGAAGCAAATAACTGGGGAGTTAAATGGGTAAATGTATATATATTAAAGTAGACAAGTAAAAGGAGCC
TAAGGCTCCTATTTTTCTAT

Downstream 100 bases:

>100_bases
TACTAAGGATATTGTTAATAAATATAACTTTAGTTTTACAAAAAGTTTGGGACAAAATTTTTTGATAGATGATGGAGTTA
TAAAAGATATTGTAGAAGGT

Product: DNA primase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MYISLGDGFVMIKEVIVVEGRDDITAVKRAVDAEVIAVGGFGINAKVINRIKEAQKRQGVIVFTDPDFAGEKIRKIISKR
VEGVRHAYISKGEGYKDGDIGVENASPKAIISALNSAKCNVKIKREEFSIQDMMVYGLSGATDSKERRDKLAKVLRIGYC
NTSQFLTRLNNYGITREEFLNGIRKIDEESSYGKK

Sequences:

>Translated_195_residues
MYISLGDGFVMIKEVIVVEGRDDITAVKRAVDAEVIAVGGFGINAKVINRIKEAQKRQGVIVFTDPDFAGEKIRKIISKR
VEGVRHAYISKGEGYKDGDIGVENASPKAIISALNSAKCNVKIKREEFSIQDMMVYGLSGATDSKERRDKLAKVLRIGYC
NTSQFLTRLNNYGITREEFLNGIRKIDEESSYGKK
>Mature_195_residues
MYISLGDGFVMIKEVIVVEGRDDITAVKRAVDAEVIAVGGFGINAKVINRIKEAQKRQGVIVFTDPDFAGEKIRKIISKR
VEGVRHAYISKGEGYKDGDIGVENASPKAIISALNSAKCNVKIKREEFSIQDMMVYGLSGATDSKERRDKLAKVLRIGYC
NTSQFLTRLNNYGITREEFLNGIRKIDEESSYGKK

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21671; Mature: 21671

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYISLGDGFVMIKEVIVVEGRDDITAVKRAVDAEVIAVGGFGINAKVINRIKEAQKRQGV
CEEECCCCHHEEEHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCE
IVFTDPDFAGEKIRKIISKRVEGVRHAYISKGEGYKDGDIGVENASPKAIISALNSAKCN
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCE
VKIKREEFSIQDMMVYGLSGATDSKERRDKLAKVLRIGYCNTSQFLTRLNNYGITREEFL
EEEEHHHHCHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
NGIRKIDEESSYGKK
HHHHHHCCCCCCCCC
>Mature Secondary Structure
MYISLGDGFVMIKEVIVVEGRDDITAVKRAVDAEVIAVGGFGINAKVINRIKEAQKRQGV
CEEECCCCHHEEEHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCE
IVFTDPDFAGEKIRKIISKRVEGVRHAYISKGEGYKDGDIGVENASPKAIISALNSAKCN
EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCE
VKIKREEFSIQDMMVYGLSGATDSKERRDKLAKVLRIGYCNTSQFLTRLNNYGITREEFL
EEEEHHHHCHHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
NGIRKIDEESSYGKK
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]