| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is yjeA [H]
Identifier: 28199976
GI number: 28199976
Start: 2514582
End: 2517284
Strand: Reverse
Name: yjeA [H]
Synonym: PD2120
Alternate gene names: 28199976
Gene position: 2517284-2514582 (Counterclockwise)
Preceding gene: 28199977
Following gene: 28199975
Centisome position: 99.9
GC content: 43.99
Gene sequence:
>2703_bases ATGTTAAATCAAGCCAAACCGCTCAGTTCTTTATTACTGAATCTGTGTACATTGCTGGCACTTGTAGCTTGTAAGCATCA ATCAACACCTGTTGAGTCTGCATCACCGGTCACTACCGTTTCAGTTGACGTTAAACATCATTCCCCTGACCCACAACAGG CCCAGCCACTTCTAGCGTCTTTGCATCAACAGTTAGAAAGTTACCGTCGTATTATGGTGCTTCTCACGGATGATGGGGTA CAGTCGCCTCAGGAGCGTGTTACTTCGAGCCAAGTTGGCCAAATTCTGTTTAATGAAGGATTGAATCAACGCACCGCCTT TTCTAAAAGAATTGATGCACTGCTTGCTTCTGGTGCTCCTAACCGTTTTGATACTTTGACAGTAATACTGGATTATATTG AGTCCTCCCCTGATCTCTATGACGCTGATCGTTTGGCCTTTCGTGAAGCGTTAAATGATCTTGACGCCCGTATTAACCAT GATTCGGCGCTTCCGGCGATAAAGTTGCGTCAACGTATTCATGAAGATATAGATGCATTAAATCAGATTGAGCGCAACTA CAATCAGGAAATTACTCGGCTATCTATTCCTTTTGATCGTAATCGAGGAATCCTTATTAAGCGTGAAAAGTGGGATGACT ACGTGGCGCATTTGCGTCGTTCTTACACACGTAAAATGATTTTGCATGATTATGGAATTCTCGAAGCTTATCCGATACCA ATTGAAGAAAGCGAACATGAGATATTTGGTAATGAATTACCTCCTAAAACATTGGTACTTACCTTCGATGATGGCCCGCA TCGAATTTATACAAATGAAATCAAAGAAATCTTACAGCACTATGCTGTGCCAGCAGTGTTCTTCGAGGTTGGACGTAATA TTGGCAGATTCGATAGGGCCGGAAAACCGCGACTAGGACCTTTATCTAAAATCACCCGTGAGCTAATAGAGCAAGGATAC GCAGTTGCTAATCATAGTATGACCCATGACCTGTTATCTAAGCTTAGTGGCAATGCGCTCCGCAAAGAGGTGATTAATGC AGATATAATATTGCGTGCAGTTGATGAAAGGCGTGCACCATTATTCCGCTTCCCTTACGGAGCGCGTAATGCTGAGGGGC TGCGATTACTTTCTGAAATCGGCCTTCAATCAGTGAGATGGAATATTGATTCCCTTGACTGGGCCGATCCAGTTCCCAAT TCTGTTGCCCGGCGTGTACTCCTCCAGGTGGCCCAAAGGCAGCGTGGCATCATTTTATTTCACGATATCCATGACCGCGC AGTTAAAGCATTACCGCAGATTTTGGAGAAACTTATCGCTGAAGGCTACCAATTTGCTGGTTGGGATGGTCATGCTTTTA GCGTGAATAATAGCCATCCTAAAAGTGCCAAAATCGATGGTGAAGGGATAGAAACGACAGCTTCACGTTCTTGGGCAACA GTGATTGGTGTGGATGACTACACCAAATGGCCGAAATTGAAATACGCAGCTAACGACGCGCAGGCAATTGCTAACACATT AATTCAATCCTTTGGCTTTCCATCTTCACACGTCATTCTATTGAAGAACCGTGAGGCTACTCGCGATAAAATTCTTTCTG TTTTTAACGACTTGGCGAATGGCCGTATACAAAAAAATGATCGCCTATTCGTCTTCTTTGCTGGTCATGGCGCCACACGC CAACTCTCATTAGGACGCGAAGTGGGTTACATCATTCCTGTTGACTCGGATCCGGCGCATTTTGCAGATGATGCGATTTC AATGACCAAGATACAGAACATCGCTAAGAGCTTTGAAGCTAAGCATGTACTGCTTGTGATGGATGCTTGCTATAGCGGTT TGGGTTTAATGCCTAAACAGACACAGACCAGTCCTCGCCTTGCTACGAACATTAACCGAATGAGTCGTCAAATACTCACT TCTGGTGCGCCTGATCAACCAGTGACCGATAGAGGCCCAAATGGGCATTCCGTCTTCACATGGGCGTTGTTGAAAGCCTT GTCTGGGCATGCTGACTTTAATGATGATGGATTGATCACTGGTACTGAATTGGGAGCATACGTTGCATCAGCCGTATCAA CGGTATCAGCACAAACCCCAGCATTCGGTCCCTTGCTTGGTTCACCGGGCGGGGAATTTGTGTTCGAGATACCCAGGCGT AAAAAAATTCTGACAACACAAAACACAAAGAGACCTGTAAAGGCGATTAACTTCAATCGTCCTTTTGAGTCCGCAAATAC TACACGCCAAGCTAAAAAACTACATCAAAATACGACTGCCGTTAAATTAATCACAGTAAAAAATCTACACCGTGATGAGG CAAGATTATTATTACCTCCAACCGTTAAGTTGGGCAAAGGAAAGCTAGTCCAGCCTGCAAATGATCTTGGGTTGCAATTA TGCACTAAGGAACTTACCGATCAATTCACTGACACACTGGAACTAAAACCCCACTTTTTACTGACGTCTAAAAATTTTGG TTTCTTTTATCCTCCTCAGAGCGAATATGCACAACATGTGCCGTGGTTGCAGAACACCCTCAAAATAGATTACCCACCTG TGACCACACAACTCAATCGTGGTGATATCTATTTACAGTTAAATAATAAGGATAAAGCGCGAAAAACGTATACCACTGAC GTGGATCTTCAACCAGAAGATTCTGCTACAAAGCAGCTGGGTATGAAACTGACTAAATTATGA
Upstream 100 bases:
>100_bases ATATTAAATAATTATTATATCGTTTTCTCTAAATTTATCTCTCACGCATTATTTTCTCTATATATTTAAAATTCTTGATT TATTATTAATATAATCCCCC
Downstream 100 bases:
>100_bases GCCAGCGCTCAACCAAGATGGGCGACACCATTGCTGCCATTGCGACTGCCTCTGGTGCTGCTGGAATAGGGATCATTCGT ATTTCTGGCTCACAGATTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 900; Mature: 900
Protein sequence:
>900_residues MLNQAKPLSSLLLNLCTLLALVACKHQSTPVESASPVTTVSVDVKHHSPDPQQAQPLLASLHQQLESYRRIMVLLTDDGV QSPQERVTSSQVGQILFNEGLNQRTAFSKRIDALLASGAPNRFDTLTVILDYIESSPDLYDADRLAFREALNDLDARINH DSALPAIKLRQRIHEDIDALNQIERNYNQEITRLSIPFDRNRGILIKREKWDDYVAHLRRSYTRKMILHDYGILEAYPIP IEESEHEIFGNELPPKTLVLTFDDGPHRIYTNEIKEILQHYAVPAVFFEVGRNIGRFDRAGKPRLGPLSKITRELIEQGY AVANHSMTHDLLSKLSGNALRKEVINADIILRAVDERRAPLFRFPYGARNAEGLRLLSEIGLQSVRWNIDSLDWADPVPN SVARRVLLQVAQRQRGIILFHDIHDRAVKALPQILEKLIAEGYQFAGWDGHAFSVNNSHPKSAKIDGEGIETTASRSWAT VIGVDDYTKWPKLKYAANDAQAIANTLIQSFGFPSSHVILLKNREATRDKILSVFNDLANGRIQKNDRLFVFFAGHGATR QLSLGREVGYIIPVDSDPAHFADDAISMTKIQNIAKSFEAKHVLLVMDACYSGLGLMPKQTQTSPRLATNINRMSRQILT SGAPDQPVTDRGPNGHSVFTWALLKALSGHADFNDDGLITGTELGAYVASAVSTVSAQTPAFGPLLGSPGGEFVFEIPRR KKILTTQNTKRPVKAINFNRPFESANTTRQAKKLHQNTTAVKLITVKNLHRDEARLLLPPTVKLGKGKLVQPANDLGLQL CTKELTDQFTDTLELKPHFLLTSKNFGFFYPPQSEYAQHVPWLQNTLKIDYPPVTTQLNRGDIYLQLNNKDKARKTYTTD VDLQPEDSATKQLGMKLTKL
Sequences:
>Translated_900_residues MLNQAKPLSSLLLNLCTLLALVACKHQSTPVESASPVTTVSVDVKHHSPDPQQAQPLLASLHQQLESYRRIMVLLTDDGV QSPQERVTSSQVGQILFNEGLNQRTAFSKRIDALLASGAPNRFDTLTVILDYIESSPDLYDADRLAFREALNDLDARINH DSALPAIKLRQRIHEDIDALNQIERNYNQEITRLSIPFDRNRGILIKREKWDDYVAHLRRSYTRKMILHDYGILEAYPIP IEESEHEIFGNELPPKTLVLTFDDGPHRIYTNEIKEILQHYAVPAVFFEVGRNIGRFDRAGKPRLGPLSKITRELIEQGY AVANHSMTHDLLSKLSGNALRKEVINADIILRAVDERRAPLFRFPYGARNAEGLRLLSEIGLQSVRWNIDSLDWADPVPN SVARRVLLQVAQRQRGIILFHDIHDRAVKALPQILEKLIAEGYQFAGWDGHAFSVNNSHPKSAKIDGEGIETTASRSWAT VIGVDDYTKWPKLKYAANDAQAIANTLIQSFGFPSSHVILLKNREATRDKILSVFNDLANGRIQKNDRLFVFFAGHGATR QLSLGREVGYIIPVDSDPAHFADDAISMTKIQNIAKSFEAKHVLLVMDACYSGLGLMPKQTQTSPRLATNINRMSRQILT SGAPDQPVTDRGPNGHSVFTWALLKALSGHADFNDDGLITGTELGAYVASAVSTVSAQTPAFGPLLGSPGGEFVFEIPRR KKILTTQNTKRPVKAINFNRPFESANTTRQAKKLHQNTTAVKLITVKNLHRDEARLLLPPTVKLGKGKLVQPANDLGLQL CTKELTDQFTDTLELKPHFLLTSKNFGFFYPPQSEYAQHVPWLQNTLKIDYPPVTTQLNRGDIYLQLNNKDKARKTYTTD VDLQPEDSATKQLGMKLTKL >Mature_900_residues MLNQAKPLSSLLLNLCTLLALVACKHQSTPVESASPVTTVSVDVKHHSPDPQQAQPLLASLHQQLESYRRIMVLLTDDGV QSPQERVTSSQVGQILFNEGLNQRTAFSKRIDALLASGAPNRFDTLTVILDYIESSPDLYDADRLAFREALNDLDARINH DSALPAIKLRQRIHEDIDALNQIERNYNQEITRLSIPFDRNRGILIKREKWDDYVAHLRRSYTRKMILHDYGILEAYPIP IEESEHEIFGNELPPKTLVLTFDDGPHRIYTNEIKEILQHYAVPAVFFEVGRNIGRFDRAGKPRLGPLSKITRELIEQGY AVANHSMTHDLLSKLSGNALRKEVINADIILRAVDERRAPLFRFPYGARNAEGLRLLSEIGLQSVRWNIDSLDWADPVPN SVARRVLLQVAQRQRGIILFHDIHDRAVKALPQILEKLIAEGYQFAGWDGHAFSVNNSHPKSAKIDGEGIETTASRSWAT VIGVDDYTKWPKLKYAANDAQAIANTLIQSFGFPSSHVILLKNREATRDKILSVFNDLANGRIQKNDRLFVFFAGHGATR QLSLGREVGYIIPVDSDPAHFADDAISMTKIQNIAKSFEAKHVLLVMDACYSGLGLMPKQTQTSPRLATNINRMSRQILT SGAPDQPVTDRGPNGHSVFTWALLKALSGHADFNDDGLITGTELGAYVASAVSTVSAQTPAFGPLLGSPGGEFVFEIPRR KKILTTQNTKRPVKAINFNRPFESANTTRQAKKLHQNTTAVKLITVKNLHRDEARLLLPPTVKLGKGKLVQPANDLGLQL CTKELTDQFTDTLELKPHFLLTSKNFGFFYPPQSEYAQHVPWLQNTLKIDYPPVTTQLNRGDIYLQLNNKDKARKTYTTD VDLQPEDSATKQLGMKLTKL
Specific function: Unknown
COG id: COG4249
COG function: function code R; Uncharacterized protein containing caspase domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide deacetylase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021729 - InterPro: IPR011330 - InterPro: IPR017219 - InterPro: IPR002509 [H]
Pfam domain/function: PF11738 DUF3298; PF01522 Polysacc_deac_1 [H]
EC number: NA
Molecular weight: Translated: 100797; Mature: 100797
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00018 EF_HAND_1 ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNQAKPLSSLLLNLCTLLALVACKHQSTPVESASPVTTVSVDVKHHSPDPQQAQPLLAS CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHH LHQQLESYRRIMVLLTDDGVQSPQERVTSSQVGQILFNEGLNQRTAFSKRIDALLASGAP HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC NRFDTLTVILDYIESSPDLYDADRLAFREALNDLDARINHDSALPAIKLRQRIHEDIDAL CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH NQIERNYNQEITRLSIPFDRNRGILIKREKWDDYVAHLRRSYTRKMILHDYGILEAYPIP HHHHHHHCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCC IEESEHEIFGNELPPKTLVLTFDDGPHRIYTNEIKEILQHYAVPAVFFEVGRNIGRFDRA CCCCCHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC GKPRLGPLSKITRELIEQGYAVANHSMTHDLLSKLSGNALRKEVINADIILRAVDERRAP CCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCHHHHHHHHCHHHHEEEHHHHCCC LFRFPYGARNAEGLRLLSEIGLQSVRWNIDSLDWADPVPNSVARRVLLQVAQRQRGIILF EEECCCCCCCHHHHHHHHHHCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE HDIHDRAVKALPQILEKLIAEGYQFAGWDGHAFSVNNSHPKSAKIDGEGIETTASRSWAT ECCHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEE VIGVDDYTKWPKLKYAANDAQAIANTLIQSFGFPSSHVILLKNREATRDKILSVFNDLAN EEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHC GRIQKNDRLFVFFAGHGATRQLSLGREVGYIIPVDSDPAHFADDAISMTKIQNIAKSFEA CEEECCCEEEEEEECCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC KHVLLVMDACYSGLGLMPKQTQTSPRLATNINRMSRQILTSGAPDQPVTDRGPNGHSVFT CEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH WALLKALSGHADFNDDGLITGTELGAYVASAVSTVSAQTPAFGPLLGSPGGEFVFEIPRR HHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC KKILTTQNTKRPVKAINFNRPFESANTTRQAKKLHQNTTAVKLITVKNLHRDEARLLLPP CEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEECCC TVKLGKGKLVQPANDLGLQLCTKELTDQFTDTLELKPHFLLTSKNFGFFYPPQSEYAQHV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCHHHHHHHC PWLQNTLKIDYPPVTTQLNRGDIYLQLNNKDKARKTYTTDVDLQPEDSATKQLGMKLTKL CHHHCCEEECCCCCCEEECCCEEEEEECCCCCCCCEECCCCCCCCCCHHHHHHCCHHHCC >Mature Secondary Structure MLNQAKPLSSLLLNLCTLLALVACKHQSTPVESASPVTTVSVDVKHHSPDPQQAQPLLAS CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHH LHQQLESYRRIMVLLTDDGVQSPQERVTSSQVGQILFNEGLNQRTAFSKRIDALLASGAP HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC NRFDTLTVILDYIESSPDLYDADRLAFREALNDLDARINHDSALPAIKLRQRIHEDIDAL CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH NQIERNYNQEITRLSIPFDRNRGILIKREKWDDYVAHLRRSYTRKMILHDYGILEAYPIP HHHHHHHCCCCEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCC IEESEHEIFGNELPPKTLVLTFDDGPHRIYTNEIKEILQHYAVPAVFFEVGRNIGRFDRA CCCCCHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHCCC GKPRLGPLSKITRELIEQGYAVANHSMTHDLLSKLSGNALRKEVINADIILRAVDERRAP CCCCCCCHHHHHHHHHHCCCCHHCCCHHHHHHHHHCCHHHHHHHHCHHHHEEEHHHHCCC LFRFPYGARNAEGLRLLSEIGLQSVRWNIDSLDWADPVPNSVARRVLLQVAQRQRGIILF EEECCCCCCCHHHHHHHHHHCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE HDIHDRAVKALPQILEKLIAEGYQFAGWDGHAFSVNNSHPKSAKIDGEGIETTASRSWAT ECCHHHHHHHHHHHHHHHHHCCCEECCCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEE VIGVDDYTKWPKLKYAANDAQAIANTLIQSFGFPSSHVILLKNREATRDKILSVFNDLAN EEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHC GRIQKNDRLFVFFAGHGATRQLSLGREVGYIIPVDSDPAHFADDAISMTKIQNIAKSFEA CEEECCCEEEEEEECCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC KHVLLVMDACYSGLGLMPKQTQTSPRLATNINRMSRQILTSGAPDQPVTDRGPNGHSVFT CEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHH WALLKALSGHADFNDDGLITGTELGAYVASAVSTVSAQTPAFGPLLGSPGGEFVFEIPRR HHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCC KKILTTQNTKRPVKAINFNRPFESANTTRQAKKLHQNTTAVKLITVKNLHRDEARLLLPP CEEECCCCCCCCCCEECCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEECCC TVKLGKGKLVQPANDLGLQLCTKELTDQFTDTLELKPHFLLTSKNFGFFYPPQSEYAQHV CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCHHHHHHHC PWLQNTLKIDYPPVTTQLNRGDIYLQLNNKDKARKTYTTDVDLQPEDSATKQLGMKLTKL CHHHCCEEECCCCCCEEECCCEEEEEECCCCCCCCEECCCCCCCCCCHHHHHHCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9579062; 9384377 [H]