| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28199964
Identifier: 28199964
GI number: 28199964
Start: 2493882
End: 2495012
Strand: Reverse
Name: 28199964
Synonym: PD2108
Alternate gene names: NA
Gene position: 2495012-2493882 (Counterclockwise)
Preceding gene: 28199965
Following gene: 28199963
Centisome position: 99.02
GC content: 54.11
Gene sequence:
>1131_bases GTGACCGCCCTGACCCTGGCCGCCGGCCAACAAGTGACCGGCCCGGCCACCCAAATGCTGCAAAACGCCGCAGTCAACTA CATCCAAAGCCTGGGCGCCCGCGAAATCAAAGACCTTGCCGACACCCTGGGCAGCGACACCGCCCGCAGCGCCCTGCAAG GCCTCCTGGGTTGTGCCGGTGCCGCCGCCCAAGGCCAGGCTTGTGGTGCTGGCGCGGTAGGTGGTGCCGCCGCCGTTGTC ATCAACAGCCTTCTAGACCGCGCCAACGGTGCTGAAGCGGCCAGCCTCAGCGCTGAAGAAAAACAACACCGTACCGACCT AGTCACCAGCCTGGTGGCCGGCATCACCACCGCCGCCGGAGGCGATGCCGCCGTCAGCAGCGCCGCCGCCCGCCTGGAAA CCGAAAACAACGCCGCCTTTATCCCAGTGATTCTTGGCGCCGTCTGGCTAGCCGATAAAGGCATCACCGCCTATCAAGCT TGGCAAGACATCAAAGCGATTCGTTCCGGAGAAAAAACCCTAGAACAAGTGGCCCTAGAAAGAGGGCAGGACTACGTCAC CTCCATAGTGATTGGCAACCTTGCCAAATACGGCCTTAAAGCGGCAATGATCGGCGGTCGCTGGATTTCTGGCACCGCAA AAGAGATTGCCAATGCAGAAAAAGAAGCGCTTAGGCAAATAAAAAATAACCCCAAAGGCCCTGATTTAACCCAAAAACCG CCTGGTCAAATCATGGCGCTGCAGCGGCAAAAGCGCCTGGATGAAGTATCCGCTTTGCTTGATAAAAAGAACCCAAAAAA TGAGTTGGTGATCGCAGGGATAGAGGTCAAAGCCACACCGCGTGGTTCCGTAGGGGGAAGTAATAAAAGTGGTACAACCA AGGTATTTGACTCGCGTGCGTTAACCGATGCGCAGATCAAGGACTATGCACAGCAATTAACTGGAGGTGTGCCTTTAGAG AAGGTAAAGGACGGCGTTTATGCGGCTAAATTGAGTGATGCAACTATAGTGAATTTGAGATCGGTTTCTAAATCGAATGA CGTGACTCAAGCAAGATGGACGATTGATATCAGGAATAATCCTTCTTTTATGGAAGCTGGAAATAAAAAAGTTGAGCTTA AATTTAGGTGA
Upstream 100 bases:
>100_bases GAACCTGCCGCTTAAAGTCGGCTTTGACATCGTCGCCGCCCTACAACAACGCATCCAAAACAACACCACCTGGGAACTGG GTGGCACCGGCCACACCATC
Downstream 100 bases:
>100_bases TTAAATGTTAACGCAAGAGCAGATAGATGGTATTTATGAGGATTTAGAGCATCCATTTCATTTTCTTTGGTTTGATATAG GGGATGCTCATGGAGTTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 376; Mature: 375
Protein sequence:
>376_residues MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAGAAAQGQACGAGAVGGAAAVV INSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQA WQDIKAIRSGEKTLEQVALERGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP PGQIMALQRQKRLDEVSALLDKKNPKNELVIAGIEVKATPRGSVGGSNKSGTTKVFDSRALTDAQIKDYAQQLTGGVPLE KVKDGVYAAKLSDATIVNLRSVSKSNDVTQARWTIDIRNNPSFMEAGNKKVELKFR
Sequences:
>Translated_376_residues MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAGAAAQGQACGAGAVGGAAAVV INSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQA WQDIKAIRSGEKTLEQVALERGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP PGQIMALQRQKRLDEVSALLDKKNPKNELVIAGIEVKATPRGSVGGSNKSGTTKVFDSRALTDAQIKDYAQQLTGGVPLE KVKDGVYAAKLSDATIVNLRSVSKSNDVTQARWTIDIRNNPSFMEAGNKKVELKFR >Mature_375_residues TALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAGAAAQGQACGAGAVGGAAAVVI NSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAGGDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQAW QDIKAIRSGEKTLEQVALERGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKPP GQIMALQRQKRLDEVSALLDKKNPKNELVIAGIEVKATPRGSVGGSNKSGTTKVFDSRALTDAQIKDYAQQLTGGVPLEK VKDGVYAAKLSDATIVNLRSVSKSNDVTQARWTIDIRNNPSFMEAGNKKVELKFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39277; Mature: 39146
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: PS00070 ALDEHYDE_DEHYDR_CYS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAG CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC AAAQGQACGAGAVGGAAAVVINSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCC GDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQAWQDIKAIRSGEKTLEQVALE CHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP HCHHHHHHHHHHHHHHHHHHHHEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGQIMALQRQKRLDEVSALLDKKNPKNELVIAGIEVKATPRGSVGGSNKSGTTKVFDSRA CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCC LTDAQIKDYAQQLTGGVPLEKVKDGVYAAKLSDATIVNLRSVSKSNDVTQARWTIDIRNN CCHHHHHHHHHHHHCCCCHHHHHCCHHEEECCCCEEEEHHHCCCCCCCEEEEEEEEECCC PSFMEAGNKKVELKFR CCHHHCCCCEEEEEEC >Mature Secondary Structure TALTLAAGQQVTGPATQMLQNAAVNYIQSLGAREIKDLADTLGSDTARSALQGLLGCAG CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHCC AAAQGQACGAGAVGGAAAVVINSLLDRANGAEAASLSAEEKQHRTDLVTSLVAGITTAAG CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCC GDAAVSSAAARLETENNAAFIPVILGAVWLADKGITAYQAWQDIKAIRSGEKTLEQVALE CHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RGQDYVTSIVIGNLAKYGLKAAMIGGRWISGTAKEIANAEKEALRQIKNNPKGPDLTQKP HCHHHHHHHHHHHHHHHHHHHHEECCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC PGQIMALQRQKRLDEVSALLDKKNPKNELVIAGIEVKATPRGSVGGSNKSGTTKVFDSRA CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCHHHHCCC LTDAQIKDYAQQLTGGVPLEKVKDGVYAAKLSDATIVNLRSVSKSNDVTQARWTIDIRNN CCHHHHHHHHHHHHCCCCHHHHHCCHHEEECCCCEEEEHHHCCCCCCCEEEEEEEEECCC PSFMEAGNKKVELKFR CCHHHCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA