Click here to switch to the map view.

The map label for this gene is gltD [H]

Identifier: 28199923

GI number: 28199923

Start: 2434563

End: 2436047

Strand: Reverse

Name: gltD [H]

Synonym: PD2062

Alternate gene names: 28199923

Gene position: 2436047-2434563 (Counterclockwise)

Preceding gene: 28199924

Following gene: 28199921

Centisome position: 96.68

GC content: 56.84

Gene sequence:

>1485_bases
ATGAGTCGCAAGCACGCTTTCCAATTTCTTGATTTGCCTCGGCAGATGCCGCAACGCATCCCGGTGGAGCTGCGTACTTC
CGGGGATTGGCGGGAGTTATACGGTAAGTTCGATAAGGGTGAAGCGCAGTACCAAGCCGGTCGCTGTTTGGACTGTGGTA
ATCCATATTGCAGTTGGAAGTGTCCGGTGCATAACGCCATCCCGCAGTGGTTGCAGTTAGTGCAGGAAAATCGCATTGAT
GAGGCCGCAGCGTTGTGCCATGCAACCAACCCGCTTCCTGAAGTGTGCGGCAGGGTGTGTCCGCAGGACCGTCTCTGTGA
AGGCAGTTGCACGCTGGAGGAGTTTGGTGCGGTCACTATCGGTGCGGTGGAAAAGTACATTGTGGATACCGCGTTGCAGC
AGGGGTGGCGTCCCGATTTGAGCCATGTGCAACCGACGGGTTGGCGTGTGGCGGTGGTCGGTGCAGGGCCTGCCGGCCTT
GCCTGTGCGGATCGTTTGGCGCGTGCTGGGGTCCAGGCGGTGGTGTATGACCGCTATGAGCAGATCGGCGGGTTGCTGCA
GTTCGGGATTCCCAGTTTTAAGCTTGATAAGGCGGTGATGAGTACGCGCCGCCAAGTGCTTGAGGGCATGGGCGTAGAGT
TTCGATTGGGTGTGGAGATTGGAAAGGATCTGGGGATTGAAGCGTTGTTGGAGGACTACGATGCTGTGTTCCTTGGCGTC
GGTGCGTATCGCTACACGGACGGTGGCTTGCCGGGTCAGGACTTGAAAAACGTGTTGCCGGCATTACCGTTTTTGGTTCA
GAACGGACGTATCATTTCTGGCAATGATCCGTATGGCCGTCCGATTGCCGGTTGGGAGGATCAGGTGCAGTTGCCGGATG
TGGCGGGGAAGTCTGTGGTTGTACTCGGTGGCGGTGATACCGGCATGGATTGTGTACGGAGTGCGATCCGTTTAGGTGCC
ACCAAAGTCACCTGTATCTATCGGCGTGATGAGGCGAATATGCCTGGCTCGGCGCGTGAGGTTGCTAACGCGCGGGAAGA
GGGGGTGCGCTTTCTGTTTAATCGTCAGCCATTGTCGATTCAATCCGGTACCGACAAACAAGCCATTGGTGTCACTGTGG
TGGAAACGAAGCTTGCTGAGCCGGATGCCAATGGTCGTCGCAACGCAGTGCCTATCCAGGGTACTGAAGCGGTGCTGGAA
GCGGATGTGGTGATTATTGCTTTTGGTTTTTCGCCGATGTTGCTGGAGTGGTTAACTGCGCAGGGTGTACAAGCGTCGAG
CAACGGCCGCATTGTGGTGGCGTTGTCTGATACTGGCGATAGACTGACCTATCAGACAACGCATCCGAAGTTGTTTGCTG
GTGGTGATTGTGTGCGTGGTGCCGATTTGGTTGTCACTGCCGTGGCCGAGGGGCGCGACGCGGCTGAGAGCATTGTGCGG
TGGTTGCGTGCGACTGCACAGGTGATGGATGTTGCGGTGATCTGA

Upstream 100 bases:

>100_bases
AAGGGACTGCGTTTTTCTCTCTGCTATCGCTCTTTCTCAGAGTATGTGTTCCCGCTGGATGGTGAGTGCGTGGAACGAAG
AAGTCACGGAATCTTTATTT

Downstream 100 bases:

>100_bases
GCGGGATGCTGACGCATTGCACCAAGCCTAGTGGGCTTCGCTGGAGGGAGGATGAATATTGGTTCTCCTTTTGGTTCTCC
TTGAGTTTATCTTTGGGATG

Product: glutamate synthase subunit beta

Products: NA

Alternate protein names: Glutamate synthase subunit beta; GLTS beta chain; NADPH-GOGAT [H]

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MSRKHAFQFLDLPRQMPQRIPVELRTSGDWRELYGKFDKGEAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQENRID
EAAALCHATNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTALQQGWRPDLSHVQPTGWRVAVVGAGPAGL
ACADRLARAGVQAVVYDRYEQIGGLLQFGIPSFKLDKAVMSTRRQVLEGMGVEFRLGVEIGKDLGIEALLEDYDAVFLGV
GAYRYTDGGLPGQDLKNVLPALPFLVQNGRIISGNDPYGRPIAGWEDQVQLPDVAGKSVVVLGGGDTGMDCVRSAIRLGA
TKVTCIYRRDEANMPGSAREVANAREEGVRFLFNRQPLSIQSGTDKQAIGVTVVETKLAEPDANGRRNAVPIQGTEAVLE
ADVVIIAFGFSPMLLEWLTAQGVQASSNGRIVVALSDTGDRLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRDAAESIVR
WLRATAQVMDVAVI

Sequences:

>Translated_494_residues
MSRKHAFQFLDLPRQMPQRIPVELRTSGDWRELYGKFDKGEAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQENRID
EAAALCHATNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTALQQGWRPDLSHVQPTGWRVAVVGAGPAGL
ACADRLARAGVQAVVYDRYEQIGGLLQFGIPSFKLDKAVMSTRRQVLEGMGVEFRLGVEIGKDLGIEALLEDYDAVFLGV
GAYRYTDGGLPGQDLKNVLPALPFLVQNGRIISGNDPYGRPIAGWEDQVQLPDVAGKSVVVLGGGDTGMDCVRSAIRLGA
TKVTCIYRRDEANMPGSAREVANAREEGVRFLFNRQPLSIQSGTDKQAIGVTVVETKLAEPDANGRRNAVPIQGTEAVLE
ADVVIIAFGFSPMLLEWLTAQGVQASSNGRIVVALSDTGDRLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRDAAESIVR
WLRATAQVMDVAVI
>Mature_493_residues
SRKHAFQFLDLPRQMPQRIPVELRTSGDWRELYGKFDKGEAQYQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQENRIDE
AAALCHATNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTALQQGWRPDLSHVQPTGWRVAVVGAGPAGLA
CADRLARAGVQAVVYDRYEQIGGLLQFGIPSFKLDKAVMSTRRQVLEGMGVEFRLGVEIGKDLGIEALLEDYDAVFLGVG
AYRYTDGGLPGQDLKNVLPALPFLVQNGRIISGNDPYGRPIAGWEDQVQLPDVAGKSVVVLGGGDTGMDCVRSAIRLGAT
KVTCIYRRDEANMPGSAREVANAREEGVRFLFNRQPLSIQSGTDKQAIGVTVVETKLAEPDANGRRNAVPIQGTEAVLEA
DVVIIAFGFSPMLLEWLTAQGVQASSNGRIVVALSDTGDRLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRDAAESIVRW
LRATAQVMDVAVI

Specific function: NITROGEN METABOLISM, GLUTAMATE BIOSYNTHESIS. THE CATALYZED REACTION BRINGS TOGETHER THE NITROGEN AND CARBON METABOLISM. [C]

COG id: COG0493

COG function: function code ER; NADPH-dependent glutamate synthase beta chain and related oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]

Homologues:

Organism=Homo sapiens, GI119943098, Length=463, Percent_Identity=28.7257019438445, Blast_Score=152, Evalue=8e-37,
Organism=Escherichia coli, GI1789606, Length=481, Percent_Identity=56.5488565488565, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1788811, Length=473, Percent_Identity=54.3340380549683, Blast_Score=523, Evalue=1e-149,
Organism=Escherichia coli, GI87082180, Length=488, Percent_Identity=49.7950819672131, Blast_Score=461, Evalue=1e-131,
Organism=Escherichia coli, GI1788468, Length=456, Percent_Identity=29.3859649122807, Blast_Score=172, Evalue=4e-44,
Organism=Escherichia coli, GI1789243, Length=439, Percent_Identity=32.8018223234624, Blast_Score=142, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI17570289, Length=483, Percent_Identity=33.7474120082816, Blast_Score=228, Evalue=5e-60,
Organism=Caenorhabditis elegans, GI71984108, Length=484, Percent_Identity=30.3719008264463, Blast_Score=159, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17543860, Length=318, Percent_Identity=24.8427672955975, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6320030, Length=477, Percent_Identity=34.3815513626834, Blast_Score=246, Evalue=4e-66,
Organism=Drosophila melanogaster, GI28574881, Length=485, Percent_Identity=36.2886597938144, Blast_Score=252, Evalue=4e-67,
Organism=Drosophila melanogaster, GI24665539, Length=485, Percent_Identity=36.2886597938144, Blast_Score=252, Evalue=4e-67,
Organism=Drosophila melanogaster, GI24665547, Length=486, Percent_Identity=36.2139917695473, Blast_Score=251, Evalue=8e-67,
Organism=Drosophila melanogaster, GI24665543, Length=486, Percent_Identity=36.2139917695473, Blast_Score=251, Evalue=8e-67,
Organism=Drosophila melanogaster, GI24640763, Length=448, Percent_Identity=29.6875, Blast_Score=162, Evalue=6e-40,
Organism=Drosophila melanogaster, GI18858217, Length=448, Percent_Identity=29.6875, Blast_Score=162, Evalue=6e-40,

Paralogues:

None

Copy number: 620 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR013027
- InterPro:   IPR012285
- InterPro:   IPR006006
- InterPro:   IPR009051
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.4.1.13 [H]

Molecular weight: Translated: 53511; Mature: 53379

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKHAFQFLDLPRQMPQRIPVELRTSGDWRELYGKFDKGEAQYQAGRCLDCGNPYCSWK
CCCHHHHHHHHHHHHCHHHCCEEEECCCCHHHHCCCCCCCCHHHCCCCEEECCCCCCEEE
CPVHNAIPQWLQLVQENRIDEAAALCHATNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTI
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCEEH
GAVEKYIVDTALQQGWRPDLSHVQPTGWRVAVVGAGPAGLACADRLARAGVQAVVYDRYE
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHH
QIGGLLQFGIPSFKLDKAVMSTRRQVLEGMGVEFRLGVEIGKDLGIEALLEDYDAVFLGV
HHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCEEEEEC
GAYRYTDGGLPGQDLKNVLPALPFLVQNGRIISGNDPYGRPIAGWEDQVQLPDVAGKSVV
CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
VLGGGDTGMDCVRSAIRLGATKVTCIYRRDEANMPGSAREVANAREEGVRFLFNRQPLSI
EECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHEEECCCCCEE
QSGTDKQAIGVTVVETKLAEPDANGRRNAVPIQGTEAVLEADVVIIAFGFSPMLLEWLTA
CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECCHHHHHHHHHH
QGVQASSNGRIVVALSDTGDRLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRDAAESIVR
CCCEECCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHH
WLRATAQVMDVAVI
HHHHHHHHHHHCCC
>Mature Secondary Structure 
SRKHAFQFLDLPRQMPQRIPVELRTSGDWRELYGKFDKGEAQYQAGRCLDCGNPYCSWK
CCHHHHHHHHHHHHCHHHCCEEEECCCCHHHHCCCCCCCCHHHCCCCEEECCCCCCEEE
CPVHNAIPQWLQLVQENRIDEAAALCHATNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTI
CCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCEEH
GAVEKYIVDTALQQGWRPDLSHVQPTGWRVAVVGAGPAGLACADRLARAGVQAVVYDRYE
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHH
QIGGLLQFGIPSFKLDKAVMSTRRQVLEGMGVEFRLGVEIGKDLGIEALLEDYDAVFLGV
HHCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHCCEEEEEC
GAYRYTDGGLPGQDLKNVLPALPFLVQNGRIISGNDPYGRPIAGWEDQVQLPDVAGKSVV
CEEEECCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEE
VLGGGDTGMDCVRSAIRLGATKVTCIYRRDEANMPGSAREVANAREEGVRFLFNRQPLSI
EECCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHEEECCCCCEE
QSGTDKQAIGVTVVETKLAEPDANGRRNAVPIQGTEAVLEADVVIIAFGFSPMLLEWLTA
CCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCEEEEEECCHHHHHHHHHH
QGVQASSNGRIVVALSDTGDRLTYQTTHPKLFAGGDCVRGADLVVTAVAEGRDAAESIVR
CCCEECCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHH
WLRATAQVMDVAVI
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3326786; 9278503; 9298646; 9600841; 2643092 [H]