Click here to switch to the map view.

The map label for this gene is yibP [H]

Identifier: 28199919

GI number: 28199919

Start: 2428894

End: 2430261

Strand: Reverse

Name: yibP [H]

Synonym: PD2058

Alternate gene names: 28199919

Gene position: 2430261-2428894 (Counterclockwise)

Preceding gene: 28199921

Following gene: 28199918

Centisome position: 96.45

GC content: 54.02

Gene sequence:

>1368_bases
TTGCACGTTCATAAATCTTCGGTGTGTGTTGTCGTTTTCTTGTCAGGTAATCTGAGGATGTTTGGCTACAATTCGCATCT
GTGTTGTAGTCATTGGATTGTCCGTTTGTTGTCTTATCGTTCCGTCCTTGTGCGTCTGTTTCCATTTTGTCTCCAGTGCG
CCTTGGCATTGGTGGTCGGTGCGGTGCTGGCTGAGTCTGCCGTCGCACAGAATCAGAGTGAGACCGAGCGTAAGTTGGCT
AGGACACGTAGCGAATTAAATGATGTGGCCAAGCAACGGCAGCAGTTGGAGAGTCAACGCGGTGATGCGACCCGGCGTTT
GCGTCAGGTTGATGAGCAGGTCGCGCGCTCTGCACGTGATCTTAGTCGGATTGAGGATAAGTTGCGTGAGCAGGAGCAGG
CGCTGATCCAAGCCCAAGGGCAACGTGAACAGATGCAGCAGGGATTGGAGGAGCAACGTCGTCAGCTTGCGGTCTTGCTG
CGTGTTGTGTATCAAGTGGGTGACAGTGTGCCGCTCAAGTTGTTGTTATCTCAGGATAGTGTGGCGGATGCGAATCGGTT
AGTGATCTACCATCGATATCTGCAGCGCGCGCGTGCCGAGCGTATTAGGGCGTTGACTCAGGAGTTGCAGGGCTTGGTTG
CGTTGGAGCAGCGTATCGCTGTTCAGCGTCAGACTTTGGAGCAGACACGCCTTCAGCAGGTTGGACAGGCTTCCATCCTC
AAGCAGGATCGGCAAAAGCAGGCTAAGACGGTGGCTGAATTGGATACTCGCTATCAGGAGCGTAGTAAACGCGAAAAAGT
GTTGGGGCAGAATGCCAAAGCATTGGAGCAAGTGCTTGCCAGCCTACGTGCGGCGGCAGCGCGCGCTGAGGCTGAGCGCC
GCGAAGCGGCCCGGCGTTCCGCTGCTCAGGCTGAGTTAGAAGCCAAGAGCGGTCATGTGCCCGCTAAGATGCCGCCTAAG
GGGACGACTAACGTCACTGGACCCAAGGTGGGGGGGCTGAGTTGGCCGGTGACGGGTAACTTATTAGCATCCTACGGTGG
GGCATTGCCGGATGGGAGGATCAGCAAGGGGGTATTAATCGCTGCTCCTGCCGGAAACAATGTGGTGGCAGTTGCCGATG
GCATGGTGGTATTTGCTGAATGGATGACTGGTTACGGAATGATTTTGATTGTCGATCATGGCAACGGTTACATGAGTTTG
TATGCAAACAATGACACGTTGTTGCGTAATCCAGGGACGTATGTGAAACGTGGTGAATTGGTTGCCAAGGTTGGTAGGTC
GGGAGGGCAGGGAGTGTCTGCTCTATATTTTGAGTTGCGCCACAATGGTCAGCCGATCAATCCTTTGAGTTGGTTGCAAA
AGCACTGA

Upstream 100 bases:

>100_bases
GTGATCTGTCGTTGCGCGCGGTATGGGTTTGATATGTGGTTAAGGAGGTAGTTGTGTCATTTGGTATCGATCAAGTTGTA
TTGGTTAGGTCTACGTCCGA

Downstream 100 bases:

>100_bases
AGGCGGTGTGTGATTCCGTAGAGGTATCTGTCACGAATCTATGATCGTTATTTGCTGATTCGGCGGCCATTCAATCTGTA
TTGTCTGTTGCTTCCCGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MHVHKSSVCVVVFLSGNLRMFGYNSHLCCSHWIVRLLSYRSVLVRLFPFCLQCALALVVGAVLAESAVAQNQSETERKLA
RTRSELNDVAKQRQQLESQRGDATRRLRQVDEQVARSARDLSRIEDKLREQEQALIQAQGQREQMQQGLEEQRRQLAVLL
RVVYQVGDSVPLKLLLSQDSVADANRLVIYHRYLQRARAERIRALTQELQGLVALEQRIAVQRQTLEQTRLQQVGQASIL
KQDRQKQAKTVAELDTRYQERSKREKVLGQNAKALEQVLASLRAAAARAEAERREAARRSAAQAELEAKSGHVPAKMPPK
GTTNVTGPKVGGLSWPVTGNLLASYGGALPDGRISKGVLIAAPAGNNVVAVADGMVVFAEWMTGYGMILIVDHGNGYMSL
YANNDTLLRNPGTYVKRGELVAKVGRSGGQGVSALYFELRHNGQPINPLSWLQKH

Sequences:

>Translated_455_residues
MHVHKSSVCVVVFLSGNLRMFGYNSHLCCSHWIVRLLSYRSVLVRLFPFCLQCALALVVGAVLAESAVAQNQSETERKLA
RTRSELNDVAKQRQQLESQRGDATRRLRQVDEQVARSARDLSRIEDKLREQEQALIQAQGQREQMQQGLEEQRRQLAVLL
RVVYQVGDSVPLKLLLSQDSVADANRLVIYHRYLQRARAERIRALTQELQGLVALEQRIAVQRQTLEQTRLQQVGQASIL
KQDRQKQAKTVAELDTRYQERSKREKVLGQNAKALEQVLASLRAAAARAEAERREAARRSAAQAELEAKSGHVPAKMPPK
GTTNVTGPKVGGLSWPVTGNLLASYGGALPDGRISKGVLIAAPAGNNVVAVADGMVVFAEWMTGYGMILIVDHGNGYMSL
YANNDTLLRNPGTYVKRGELVAKVGRSGGQGVSALYFELRHNGQPINPLSWLQKH
>Mature_455_residues
MHVHKSSVCVVVFLSGNLRMFGYNSHLCCSHWIVRLLSYRSVLVRLFPFCLQCALALVVGAVLAESAVAQNQSETERKLA
RTRSELNDVAKQRQQLESQRGDATRRLRQVDEQVARSARDLSRIEDKLREQEQALIQAQGQREQMQQGLEEQRRQLAVLL
RVVYQVGDSVPLKLLLSQDSVADANRLVIYHRYLQRARAERIRALTQELQGLVALEQRIAVQRQTLEQTRLQQVGQASIL
KQDRQKQAKTVAELDTRYQERSKREKVLGQNAKALEQVLASLRAAAARAEAERREAARRSAAQAELEAKSGHVPAKMPPK
GTTNVTGPKVGGLSWPVTGNLLASYGGALPDGRISKGVLIAAPAGNNVVAVADGMVVFAEWMTGYGMILIVDHGNGYMSL
YANNDTLLRNPGTYVKRGELVAKVGRSGGQGVSALYFELRHNGQPINPLSWLQKH

Specific function: Unknown

COG id: COG4942

COG function: function code D; Membrane-bound metallopeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0756 [H]

Homologues:

Organism=Escherichia coli, GI87082297, Length=391, Percent_Identity=29.923273657289, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=38.655462184874, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082174, Length=173, Percent_Identity=31.2138728323699, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87081989, Length=101, Percent_Identity=35.6435643564356, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 50490; Mature: 50490

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHVHKSSVCVVVFLSGNLRMFGYNSHLCCSHWIVRLLSYRSVLVRLFPFCLQCALALVVG
CCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLAESAVAQNQSETERKLARTRSELNDVAKQRQQLESQRGDATRRLRQVDEQVARSARD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LSRIEDKLREQEQALIQAQGQREQMQQGLEEQRRQLAVLLRVVYQVGDSVPLKLLLSQDS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
VADANRLVIYHRYLQRARAERIRALTQELQGLVALEQRIAVQRQTLEQTRLQQVGQASIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQDRQKQAKTVAELDTRYQERSKREKVLGQNAKALEQVLASLRAAAARAEAERREAARRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAQAELEAKSGHVPAKMPPKGTTNVTGPKVGGLSWPVTGNLLASYGGALPDGRISKGVLI
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEE
AAPAGNNVVAVADGMVVFAEWMTGYGMILIVDHGNGYMSLYANNDTLLRNPGTYVKRGEL
EECCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCEEEECCCCHHHHHHH
VAKVGRSGGQGVSALYFELRHNGQPINPLSWLQKH
HHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCC
>Mature Secondary Structure
MHVHKSSVCVVVFLSGNLRMFGYNSHLCCSHWIVRLLSYRSVLVRLFPFCLQCALALVVG
CCCCCCCCEEEEEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLAESAVAQNQSETERKLARTRSELNDVAKQRQQLESQRGDATRRLRQVDEQVARSARD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
LSRIEDKLREQEQALIQAQGQREQMQQGLEEQRRQLAVLLRVVYQVGDSVPLKLLLSQDS
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
VADANRLVIYHRYLQRARAERIRALTQELQGLVALEQRIAVQRQTLEQTRLQQVGQASIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQDRQKQAKTVAELDTRYQERSKREKVLGQNAKALEQVLASLRAAAARAEAERREAARRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAQAELEAKSGHVPAKMPPKGTTNVTGPKVGGLSWPVTGNLLASYGGALPDGRISKGVLI
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEE
AAPAGNNVVAVADGMVVFAEWMTGYGMILIVDHGNGYMSLYANNDTLLRNPGTYVKRGEL
EECCCCCEEEEECCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCEEEECCCCHHHHHHH
VAKVGRSGGQGVSALYFELRHNGQPINPLSWLQKH
HHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]