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The map label for this gene is acvB

Identifier: 28199901

GI number: 28199901

Start: 2398915

End: 2400273

Strand: Reverse

Name: acvB

Synonym: PD2040

Alternate gene names: NA

Gene position: 2400273-2398915 (Counterclockwise)

Preceding gene: 28199902

Following gene: 28199900

Centisome position: 95.26

GC content: 51.07

Gene sequence:

>1359_bases
ATGAAGCAATCTAAAATCCGCTCAGTCCTACAGAGCATTGCTCTGCTTGTATTGGCGGGTACCGCTGCAGCCGAACCTAA
ACTAGAGAAAATCACTCATGGTAGGTTCGAGCAGATCCCGGTCCTGCGTCCGGATGGTGAACCACAGCGCGTGGTGATCT
GGTTCAGTGGTGCTGGGCATGTTGACCAGCGTACCCGTCAGGCGGAATTATTAAGGCAGGACGGGGCAATGGTTGCACTG
GTTGATACGACCCATCTGTATAAAGTGCTCGCTGCTGATTCTAATCACTGTACATTTTCTGTCGGCGATGTCGAGAATCT
GTCGCGTTATCTGCAAGCTTACTATCGAGATAAAACATATCGGCTTCCATTATTAGTCGGTGATGGCGATGGCTCGGGGC
TAGTCTATGCGGTTGCTGCGCAGGCACCTGAAAATATACTTGCTGGTGTGGTGACCGATGGATTGTGTCCTGTAGTGGTG
CCTACGCATGCGGTTTGTGGGGCTGGTGTGGCGAGTGATCAGCATCTCAAGCCGGCGCCAGTTGCCGCTCCTTTACTTGT
CATGACGGTCTCATCTGCGCATTGTCCAGTGCAATTGACCAGCGAATTCGTCCGTAAGGTCGCACTTGGGCGTGAAATCA
GACTTGCAGCAAGTGCTGATCTACTGCCCCGCTTACGGGCAGTGCTACGCGTGTTAGGCGCACAAAAAGGTGTGAGTTTG
CCCCCACCGCCTGCTGATCTGGATGGACTACCAGTGGTGGAGGTGCCGAGTAAAGCACAAAAGAAAAGTGACACCTTTGC
AATCTTTGTTTCTGGCGACGGAGGTTGGGCCGAAATCGACAAGAAGGTGGCAGGACATCTGGCCGATGCTGATATTCCTG
TAGTGGGTTTGGATTCACTGCGGTACTTCTGGAGCGAACGTACCCCGCAAGGCTTTGCCAAAGATCTGGACCGCATTGCA
CGCTTTTATGCTCACCACTGGAAGCGTAGCCGTTTGTTGCTGGTCGGATTCTCTCAAGGTGCAGACGTGCTGCCTGCAGC
GATTAATAAGCTTTCCCCCAACACCCGCCCAATTATCCGTATGACTGCACTATTGTCGTTAGGAAAATATGCGCAATACG
AATTTCATGTCAGCAACTGGATATCAACAGACGACGAGGGTATACCGATTGCAGCAGACATGGTCAAATTGAGCTCCACA
AGAACAGTGTGTATCTATGGCGTAGATGATCAAGAAACACTGTGTCCATCATTACCACAACAGAATCGTCGCGTTGCCTT
ACCGGGCACACATCACTTTAATGGTGATTATGAAACTGTCGCCAAAACTATTTTGGCGCAGATGGAAACTGCACCTTGA

Upstream 100 bases:

>100_bases
CACAGTGCTATCCATAGGTCTATTCATGATTATTTTGATTTTGCTTTCATCATATGTGCTATCGGGTATCTTTAGTAACC
TTTCCCTGGAGTATGCTTGC

Downstream 100 bases:

>100_bases
TCTTGTTGATTACAGTTGCTCATTCATCTGTTTTGTGACATTACCCCAGGTACACAGCTAAGCATATTTATCCGCAGATG
TTTAGCTTGGACATCTGATT

Product: virulence protein

Products: NA

Alternate protein names: Virulence Protein; Type IV Secretory Pathway VirJ Component-Like Protein; Acid lerance Protein; Type IV Secretion System VirJ-Like Protein; AcvB-Related Protein; Acid Virulence Protein B; Type IV Secretory Pathway Virj Component-Related Protein; Virj-Like Protein; Glycosyl Transferase/Polysaccharide Deacetylase; Type IV Secretory Pathway VirJ Component; Virulance And Acid lerance Protein; Type IV Secretion System Virj-Like Protein; Virulence Factor; Chromosomal Virulence Protein B

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKQSKIRSVLQSIALLVLAGTAAAEPKLEKITHGRFEQIPVLRPDGEPQRVVIWFSGAGHVDQRTRQAELLRQDGAMVAL
VDTTHLYKVLAADSNHCTFSVGDVENLSRYLQAYYRDKTYRLPLLVGDGDGSGLVYAVAAQAPENILAGVVTDGLCPVVV
PTHAVCGAGVASDQHLKPAPVAAPLLVMTVSSAHCPVQLTSEFVRKVALGREIRLAASADLLPRLRAVLRVLGAQKGVSL
PPPPADLDGLPVVEVPSKAQKKSDTFAIFVSGDGGWAEIDKKVAGHLADADIPVVGLDSLRYFWSERTPQGFAKDLDRIA
RFYAHHWKRSRLLLVGFSQGADVLPAAINKLSPNTRPIIRMTALLSLGKYAQYEFHVSNWISTDDEGIPIAADMVKLSST
RTVCIYGVDDQETLCPSLPQQNRRVALPGTHHFNGDYETVAKTILAQMETAP

Sequences:

>Translated_452_residues
MKQSKIRSVLQSIALLVLAGTAAAEPKLEKITHGRFEQIPVLRPDGEPQRVVIWFSGAGHVDQRTRQAELLRQDGAMVAL
VDTTHLYKVLAADSNHCTFSVGDVENLSRYLQAYYRDKTYRLPLLVGDGDGSGLVYAVAAQAPENILAGVVTDGLCPVVV
PTHAVCGAGVASDQHLKPAPVAAPLLVMTVSSAHCPVQLTSEFVRKVALGREIRLAASADLLPRLRAVLRVLGAQKGVSL
PPPPADLDGLPVVEVPSKAQKKSDTFAIFVSGDGGWAEIDKKVAGHLADADIPVVGLDSLRYFWSERTPQGFAKDLDRIA
RFYAHHWKRSRLLLVGFSQGADVLPAAINKLSPNTRPIIRMTALLSLGKYAQYEFHVSNWISTDDEGIPIAADMVKLSST
RTVCIYGVDDQETLCPSLPQQNRRVALPGTHHFNGDYETVAKTILAQMETAP
>Mature_452_residues
MKQSKIRSVLQSIALLVLAGTAAAEPKLEKITHGRFEQIPVLRPDGEPQRVVIWFSGAGHVDQRTRQAELLRQDGAMVAL
VDTTHLYKVLAADSNHCTFSVGDVENLSRYLQAYYRDKTYRLPLLVGDGDGSGLVYAVAAQAPENILAGVVTDGLCPVVV
PTHAVCGAGVASDQHLKPAPVAAPLLVMTVSSAHCPVQLTSEFVRKVALGREIRLAASADLLPRLRAVLRVLGAQKGVSL
PPPPADLDGLPVVEVPSKAQKKSDTFAIFVSGDGGWAEIDKKVAGHLADADIPVVGLDSLRYFWSERTPQGFAKDLDRIA
RFYAHHWKRSRLLLVGFSQGADVLPAAINKLSPNTRPIIRMTALLSLGKYAQYEFHVSNWISTDDEGIPIAADMVKLSST
RTVCIYGVDDQETLCPSLPQQNRRVALPGTHHFNGDYETVAKTILAQMETAP

Specific function: Unknown

COG id: COG3946

COG function: function code U; Type IV secretory pathway, VirJ component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48951; Mature: 48951

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSKIRSVLQSIALLVLAGTAAAEPKLEKITHGRFEQIPVLRPDGEPQRVVIWFSGAGH
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHCCCEECCCCCCCEEEEEECCCCC
VDQRTRQAELLRQDGAMVALVDTTHLYKVLAADSNHCTFSVGDVENLSRYLQAYYRDKTY
HHHHHHHHHHHHHCCCEEEEEEHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHHCCCEE
RLPLLVGDGDGSGLVYAVAAQAPENILAGVVTDGLCPVVVPTHAVCGAGVASDQHLKPAP
EEEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCCCCCCC
VAAPLLVMTVSSAHCPVQLTSEFVRKVALGREIRLAASADLLPRLRAVLRVLGAQKGVSL
CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCC
PPPPADLDGLPVVEVPSKAQKKSDTFAIFVSGDGGWAEIDKKVAGHLADADIPVVGLDSL
CCCCCCCCCCCEEECCCHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEECHHHH
RYFWSERTPQGFAKDLDRIARFYAHHWKRSRLLLVGFSQGADVLPAAINKLSPNTRPIIR
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHH
MTALLSLGKYAQYEFHVSNWISTDDEGIPIAADMVKLSSTRTVCIYGVDDQETLCPSLPQ
HHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHEEECCCCEEEEEECCCCHHHCCCCCC
QNRRVALPGTHHFNGDYETVAKTILAQMETAP
CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKQSKIRSVLQSIALLVLAGTAAAEPKLEKITHGRFEQIPVLRPDGEPQRVVIWFSGAGH
CCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHCCCEECCCCCCCEEEEEECCCCC
VDQRTRQAELLRQDGAMVALVDTTHLYKVLAADSNHCTFSVGDVENLSRYLQAYYRDKTY
HHHHHHHHHHHHHCCCEEEEEEHHHHHHHEECCCCCEEEEECCHHHHHHHHHHHHCCCEE
RLPLLVGDGDGSGLVYAVAAQAPENILAGVVTDGLCPVVVPTHAVCGAGVASDQHLKPAP
EEEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEECCHHHHCCCCCCCCCCCCCC
VAAPLLVMTVSSAHCPVQLTSEFVRKVALGREIRLAASADLLPRLRAVLRVLGAQKGVSL
CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCC
PPPPADLDGLPVVEVPSKAQKKSDTFAIFVSGDGGWAEIDKKVAGHLADADIPVVGLDSL
CCCCCCCCCCCEEECCCHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEECHHHH
RYFWSERTPQGFAKDLDRIARFYAHHWKRSRLLLVGFSQGADVLPAAINKLSPNTRPIIR
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHH
MTALLSLGKYAQYEFHVSNWISTDDEGIPIAADMVKLSSTRTVCIYGVDDQETLCPSLPQ
HHHHHHHCCHHEEEEEECCCCCCCCCCCCCHHHHEEECCCCEEEEEECCCCHHHCCCCCC
QNRRVALPGTHHFNGDYETVAKTILAQMETAP
CCCEEECCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA