| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is pgpB
Identifier: 28199822
GI number: 28199822
Start: 2297166
End: 2297873
Strand: Reverse
Name: pgpB
Synonym: PD1955
Alternate gene names: NA
Gene position: 2297873-2297166 (Counterclockwise)
Preceding gene: 77747720
Following gene: 28199815
Centisome position: 91.19
GC content: 55.79
Gene sequence:
>708_bases ATGCCCGTTTCCCCGACTGATGCGTTTGTCGGCTTCTGTCGTTGGCGACGCGCTCATGTGCGGCATCACCAGTTGCTGTG CTTAGGGGTGTTGCTGCCTCTTGGTCTGTGCGTTGTGTTGGCTGTCGGCGTTTACCAACGTCAGTCTTTCTGCTTCGATC TGCCGTTGTTGTATTGGATACGTACCCTGGCCTCGCCGAATCTTGATGCCTTTTTTGTCGCATTGACTCAGCAGGGTTAC TGGTATGGGGTGGTGGGTATTGATGTGTTGATTGTGCTGATCCTGTTGGGGCAGCGGCGTTGGTATGTCGCTGGGTTTGC TGGATCCAGTCTTGTTGGTGCGAAGCTCTTGAATATTGCTGCCAAGCATCTCTTCCAGCGTGAGCGGCCCATGCTGTGGG AGACAATTGCTCCGGCTCATGGGTTCAGCTTTCCCAGCGCCCACGCGATGGATGCGATGGCGATGCTGACAGTGTTGCTT GTGCTGCTGCGGGGTGTACGCTGGCGTGGATTATTGATGATGGTTCCAGGGACGTTTGTGCTGCTGTTGAGTGCTTCGCG TCTATATCTCGGTGTGCATTACCCTTCCGACATTCTTGGCGGCTGGAGTGCGGCGCTGGTTTGGGTGATCGGGCTGTATT TGCTGATGTTTCGCGATGCGGATCGGTTGCTAGCATTGCGCTCTAGGACGGGCCCTGAGCGCGATTGA
Upstream 100 bases:
>100_bases GCGCCGGTGTTTATTGATGGTGAGAAGTCGGTAACCTTGCGTGGCGGAAACATTGCCCAGGACTTCATCACTTTAGTTGA CGATTACGTAGAACGCAGGT
Downstream 100 bases:
>100_bases TTCCGTTGGATTGGACACCTTTTTGTATCGTTTCGGTCGCCGTGCGTCGTGCCAGCACTGCTTCTCGATGGGTGATGTAG ACGTTCGCGCCGATAATGAT
Product: phosphatidylglycerophosphatase B
Products: NA
Alternate protein names: Phosphatidylglycerophosphatase B-Related Protein; Phosphoesterase PA-Phosphatase Related Protein; Phosphoesterase PA-Phosphatase-Like Protein; Phosphoesterase PA-Phosphatase-Related Protein; Phosphatase; Membrane-Associated Phosphoesterase; PAP2 Family Protein; Phosphatidylglycerophosphatase B; Transmembrane Acid Phosphatase; PAP2 Superfamily Protein; PA-Phosphatase Related Phosphoesterase; Undecaprenyl-Diphosphatase
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MPVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWIRTLASPNLDAFFVALTQQGY WYGVVGIDVLIVLILLGQRRWYVAGFAGSSLVGAKLLNIAAKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLL VLLRGVRWRGLLMMVPGTFVLLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTGPERD
Sequences:
>Translated_235_residues MPVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWIRTLASPNLDAFFVALTQQGY WYGVVGIDVLIVLILLGQRRWYVAGFAGSSLVGAKLLNIAAKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLL VLLRGVRWRGLLMMVPGTFVLLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTGPERD >Mature_234_residues PVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWIRTLASPNLDAFFVALTQQGYW YGVVGIDVLIVLILLGQRRWYVAGFAGSSLVGAKLLNIAAKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLLV LLRGVRWRGLLMMVPGTFVLLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTGPERD
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26351; Mature: 26220
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH RTLASPNLDAFFVALTQQGYWYGVVGIDVLIVLILLGQRRWYVAGFAGSSLVGAKLLNIA HHHCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH AKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLLVLLRGVRWRGLLMMVPGTFV HHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHH LLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTGPERD HHHHHCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC >Mature Secondary Structure PVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH RTLASPNLDAFFVALTQQGYWYGVVGIDVLIVLILLGQRRWYVAGFAGSSLVGAKLLNIA HHHCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH AKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLLVLLRGVRWRGLLMMVPGTFV HHHHHHHCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHH LLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTGPERD HHHHHCHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA