| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is pspA
Identifier: 28198885
GI number: 28198885
Start: 1181580
End: 1182764
Strand: Reverse
Name: pspA
Synonym: PD0986
Alternate gene names: NA
Gene position: 1182764-1181580 (Counterclockwise)
Preceding gene: 28198886
Following gene: 28198884
Centisome position: 46.94
GC content: 60.08
Gene sequence:
>1185_bases GTGACGGGCTGGGCGATCCCCTGGAGGCCGCTCATCACTCAAGTCATGAACCGCCTTTATATTCAGGACAGCGGCCAAAC CTACCGCAACACCACCTACCAGGCGTATACCAAACCCACCCACCAGCTGGGGGAACTGGTGACCGCCGGCATTGAGAAAC TGCTGGAGATCACCAAAATCGCCAGCCCCGCCTCGCGGCTCAAGGCCGCGGCGGCCAAAGAGCTGATGTATAACACCGAG CAAGGTAATTACTCCAACCTGGTGTATCTGGAGGGCCACAGCCGCGGCACGATGACCCTTAGCAATGCACTGCGGGTGCT GGCAGGATTTAATGTGGGTGACACGAAATTAGAGGTGCTTGCCTACAACCCTGCGGCAGAAGGCAACCGCCTTAACACCA CCTACCAGGCGTATACCAAACCCACCCACCAGCTGGGGGAACTGGTGACCGCCGGCATTGAGAAACTGCTGGAGATCACC AAAATCGCCAGCCCCGCCTCGCGGCTCAAGGCCGCGGCGGCCAAAGAGCTGATGTATAACACCGAGCAAGGTAATTACTC CAACCTGGTGTATTTGGAGGGCCACAGCCGCGGCACGATGACCCTTAGCAATGCATTGCGGGTGCTCGCCGCGGATCATG TGTTGAGTGACACTCTTGAAATCCGCGCCTACAACCCTGCGGCAGAAGGCAACCGCCTTGCTGAAGCCGCTGCCCTGGTG ACGAAAAAACCAGTCAAGACCTGGGCCCCGCCCAAGGACTTTGTGGCTAACAAGATTGGCGGCTATGCCGGCAATGCCAC CTTCCATGATCTGCGGGAGATCTTCCAAACCAACTACTCCGTGCACAGCAGCGGCGGCACCGCCGCCCTGGGCAGCGACT CAAACCATGTCGATAAAGAGAAACTGTTCAGCTACGAAGGCCTGGATATCAAGGACATGAACGCCAAGCGTCAGGGGCGG ACCATCGGGCTGCTGCAGCAATGGCAGAAGACGCGGCGTCCCGAGGACCCGGTGGCGACCCAACTCACCCAGTTGCAACG CCTGCTGTGGCAATCGGGCCAGTGGCAACAGCAGTTAGACAACACCCCCGGGCTGCTGACACGGCCCACCCCGACCACCC CGGACGCCCCCAGCGCCCGGCAACAGCAACTCCAACAGTTGCGCCAGTCCCTCACCCCCTACTAA
Upstream 100 bases:
>100_bases TCAACTTTATTGAAGCCGCCCGCCAAAAAAACACCGAAGACTACCAACGCGCCCGCAAACTGATGGACGGCATCTTGCAA TCGGTGGTGATCCAGAAGCA
Downstream 100 bases:
>100_bases GGAGACCCCCTTATGTCCCTGCATCCGCGACTGTCTTGCTCCCTGCTGGCCGCCAGCCTGCTGCTGGCCGGCTGCAGCAG CGGCCCCCCCATCGACAGCC
Product: hemagglutinin-like secreted protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 393
Protein sequence:
>394_residues MTGWAIPWRPLITQVMNRLYIQDSGQTYRNTTYQAYTKPTHQLGELVTAGIEKLLEITKIASPASRLKAAAAKELMYNTE QGNYSNLVYLEGHSRGTMTLSNALRVLAGFNVGDTKLEVLAYNPAAEGNRLNTTYQAYTKPTHQLGELVTAGIEKLLEIT KIASPASRLKAAAAKELMYNTEQGNYSNLVYLEGHSRGTMTLSNALRVLAADHVLSDTLEIRAYNPAAEGNRLAEAAALV TKKPVKTWAPPKDFVANKIGGYAGNATFHDLREIFQTNYSVHSSGGTAALGSDSNHVDKEKLFSYEGLDIKDMNAKRQGR TIGLLQQWQKTRRPEDPVATQLTQLQRLLWQSGQWQQQLDNTPGLLTRPTPTTPDAPSARQQQLQQLRQSLTPY
Sequences:
>Translated_394_residues MTGWAIPWRPLITQVMNRLYIQDSGQTYRNTTYQAYTKPTHQLGELVTAGIEKLLEITKIASPASRLKAAAAKELMYNTE QGNYSNLVYLEGHSRGTMTLSNALRVLAGFNVGDTKLEVLAYNPAAEGNRLNTTYQAYTKPTHQLGELVTAGIEKLLEIT KIASPASRLKAAAAKELMYNTEQGNYSNLVYLEGHSRGTMTLSNALRVLAADHVLSDTLEIRAYNPAAEGNRLAEAAALV TKKPVKTWAPPKDFVANKIGGYAGNATFHDLREIFQTNYSVHSSGGTAALGSDSNHVDKEKLFSYEGLDIKDMNAKRQGR TIGLLQQWQKTRRPEDPVATQLTQLQRLLWQSGQWQQQLDNTPGLLTRPTPTTPDAPSARQQQLQQLRQSLTPY >Mature_393_residues TGWAIPWRPLITQVMNRLYIQDSGQTYRNTTYQAYTKPTHQLGELVTAGIEKLLEITKIASPASRLKAAAAKELMYNTEQ GNYSNLVYLEGHSRGTMTLSNALRVLAGFNVGDTKLEVLAYNPAAEGNRLNTTYQAYTKPTHQLGELVTAGIEKLLEITK IASPASRLKAAAAKELMYNTEQGNYSNLVYLEGHSRGTMTLSNALRVLAADHVLSDTLEIRAYNPAAEGNRLAEAAALVT KKPVKTWAPPKDFVANKIGGYAGNATFHDLREIFQTNYSVHSSGGTAALGSDSNHVDKEKLFSYEGLDIKDMNAKRQGRT IGLLQQWQKTRRPEDPVATQLTQLQRLLWQSGQWQQQLDNTPGLLTRPTPTTPDAPSARQQQLQQLRQSLTPY
Specific function: Unknown
COG id: COG3210
COG function: function code U; Large exoproteins involved in heme utilization or adhesion
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43632; Mature: 43501
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGWAIPWRPLITQVMNRLYIQDSGQTYRNTTYQAYTKPTHQLGELVTAGIEKLLEITKI CCCCCCCHHHHHHHHHHHHEECCCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH ASPASRLKAAAAKELMYNTEQGNYSNLVYLEGHSRGTMTLSNALRVLAGFNVGDTKLEVL CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEE AYNPAAEGNRLNTTYQAYTKPTHQLGELVTAGIEKLLEITKIASPASRLKAAAAKELMYN EECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC TEQGNYSNLVYLEGHSRGTMTLSNALRVLAADHVLSDTLEIRAYNPAAEGNRLAEAAALV CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH TKKPVKTWAPPKDFVANKIGGYAGNATFHDLREIFQTNYSVHSSGGTAALGSDSNHVDKE HCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCHH KLFSYEGLDIKDMNAKRQGRTIGLLQQWQKTRRPEDPVATQLTQLQRLLWQSGQWQQQLD HHHCCCCCCEECCCCHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHC NTPGLLTRPTPTTPDAPSARQQQLQQLRQSLTPY CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure TGWAIPWRPLITQVMNRLYIQDSGQTYRNTTYQAYTKPTHQLGELVTAGIEKLLEITKI CCCCCCHHHHHHHHHHHHEECCCCCCHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHH ASPASRLKAAAAKELMYNTEQGNYSNLVYLEGHSRGTMTLSNALRVLAGFNVGDTKLEVL CCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEE AYNPAAEGNRLNTTYQAYTKPTHQLGELVTAGIEKLLEITKIASPASRLKAAAAKELMYN EECCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC TEQGNYSNLVYLEGHSRGTMTLSNALRVLAADHVLSDTLEIRAYNPAAEGNRLAEAAALV CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH TKKPVKTWAPPKDFVANKIGGYAGNATFHDLREIFQTNYSVHSSGGTAALGSDSNHVDKE HCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCEEECCCCCCCCHH KLFSYEGLDIKDMNAKRQGRTIGLLQQWQKTRRPEDPVATQLTQLQRLLWQSGQWQQQLD HHHCCCCCCEECCCCHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHC NTPGLLTRPTPTTPDAPSARQQQLQQLRQSLTPY CCCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA