| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198837
Identifier: 28198837
GI number: 28198837
Start: 1137078
End: 1138382
Strand: Reverse
Name: 28198837
Synonym: PD0935
Alternate gene names: NA
Gene position: 1138382-1137078 (Counterclockwise)
Preceding gene: 28198838
Following gene: 28198836
Centisome position: 45.18
GC content: 42.68
Gene sequence:
>1305_bases ATGAGTATTTTTCGCATACTCGTTTTTTTTGTGATTCTTTTTATTTCTCGTTTTAGTTTTGCTTGCGAGATTGGTGAGCC GCATTGGGACCCTGGTCAGTGTTTAGATAGGGGCGAGGCTTATGCTATCGCTAGTGCAAGTTATCAGATGTGGCGTTCTA ATCAATTGAAGGATAGTAATATTCCTGGTTTGCAGGTGGTTGATTGTCCTATGACTGATGATGGTCATATTATTGGTTTT GGGGGGTATACCACTGCGCCCGGTTATCCCTCTTCTGATAGTTGTAGTAATAGTCTGGTCTATTTTCAGCGGGTTTATCC TGAGGGGAAAACTTGTCTTACGCGTTCTCCTAAATCACTTCTTGGTTTAACGCTTCCTTCTGGTGTGCGTGTTCCGTCTA CGGCTTGTTATGATGGTTGTTCTTATGATTTGGATCGTTCTCATGGGATTATTGGTGTAGGACAAGATGACGGCAAGGTT AGGTATGTTTTGCCTGGTATGACCCCTAATGGGAATTTGTGTGTTCTTTCTCCGCCAGGTTCTTCTTCTGAGTCTAGTCA GGATACGCCTCCTGTTCAGGATGTCGTTAAAGATGAATGTACACATATGGGCACATTAACGCAGTGTGTGAGGCCGGACG GTAAATATTGTGCTACTTCATCGACTGGGCATCAGTATTGTTGGAAACCAGGTGAGGTGGGAACTCAGATTGCTTCTGAT GGTAATCATGCAGCAACATTGAATAAAGTTGATGTTCCAGTTATTGCTCCTGTGGACGCGCCTAAGGATAAGGGTGATTG GCGTGTAGATGGTAAGGGCACATCTACTCAGATTATTAATAATACTTATAACAATTATAATACAACTACATTTGCTTCTA CTGGTTCTTCTGGTGGCGGTTCTAGCGGTGGTTCTAGTAGTTCTGGTGGTCAGAGTAGTGGCGGCGGTAGTGATAAGTCG GGTGGCGGTGATAAATCAGGTGGTGATAAGGATACACCTGGTAGTGGTTCACCTTCAGGGACTGGTGTTCTTTATAAACG TAATGGTAAGACATTGGATACCGTCGTATCAGGATATCAGGCTAAGGTAAATGATCTTCCTTTTATTTCTGGTATTTCTT CCTTTTTAACCATTTCCGCATCTGGGGAATGTCCTATATTTACGTTGTCTGCTTCTGCGTATTGGCCAGAAATGACATTT GATTATCATTGCAGCGGTGTTTTTTTGAGTTTTTTGAGGTCCGCTGGTTATATTATTTTTGCGATTGCTTCTTATTTTGC TGTTCGTATTGCTACCTTGCGTTAG
Upstream 100 bases:
>100_bases TTCACCGGCTGGTGGGGGTGTGTGCTTTGATGATTACTTTATTCTCTTGTTTCTTGGGTGCTTTATGCGGATGGGCTGCT GTTAAGGGGCTGGATGCTTC
Downstream 100 bases:
>100_bases GTTGGAGGAATCATGTTTATATTAAGGGTTGCGTGGTTAACTGATCTTACGCAGTGGATTTGGGATTTAATCACTAAGAT GTTTCTTGCTTTAGCTGATT
Product: hypothetical protein
Products: NA
Alternate protein names: Filamentous Phage PhiLf Adsorption Protein III
Number of amino acids: Translated: 434; Mature: 433
Protein sequence:
>434_residues MSIFRILVFFVILFISRFSFACEIGEPHWDPGQCLDRGEAYAIASASYQMWRSNQLKDSNIPGLQVVDCPMTDDGHIIGF GGYTTAPGYPSSDSCSNSLVYFQRVYPEGKTCLTRSPKSLLGLTLPSGVRVPSTACYDGCSYDLDRSHGIIGVGQDDGKV RYVLPGMTPNGNLCVLSPPGSSSESSQDTPPVQDVVKDECTHMGTLTQCVRPDGKYCATSSTGHQYCWKPGEVGTQIASD GNHAATLNKVDVPVIAPVDAPKDKGDWRVDGKGTSTQIINNTYNNYNTTTFASTGSSGGGSSGGSSSSGGQSSGGGSDKS GGGDKSGGDKDTPGSGSPSGTGVLYKRNGKTLDTVVSGYQAKVNDLPFISGISSFLTISASGECPIFTLSASAYWPEMTF DYHCSGVFLSFLRSAGYIIFAIASYFAVRIATLR
Sequences:
>Translated_434_residues MSIFRILVFFVILFISRFSFACEIGEPHWDPGQCLDRGEAYAIASASYQMWRSNQLKDSNIPGLQVVDCPMTDDGHIIGF GGYTTAPGYPSSDSCSNSLVYFQRVYPEGKTCLTRSPKSLLGLTLPSGVRVPSTACYDGCSYDLDRSHGIIGVGQDDGKV RYVLPGMTPNGNLCVLSPPGSSSESSQDTPPVQDVVKDECTHMGTLTQCVRPDGKYCATSSTGHQYCWKPGEVGTQIASD GNHAATLNKVDVPVIAPVDAPKDKGDWRVDGKGTSTQIINNTYNNYNTTTFASTGSSGGGSSGGSSSSGGQSSGGGSDKS GGGDKSGGDKDTPGSGSPSGTGVLYKRNGKTLDTVVSGYQAKVNDLPFISGISSFLTISASGECPIFTLSASAYWPEMTF DYHCSGVFLSFLRSAGYIIFAIASYFAVRIATLR >Mature_433_residues SIFRILVFFVILFISRFSFACEIGEPHWDPGQCLDRGEAYAIASASYQMWRSNQLKDSNIPGLQVVDCPMTDDGHIIGFG GYTTAPGYPSSDSCSNSLVYFQRVYPEGKTCLTRSPKSLLGLTLPSGVRVPSTACYDGCSYDLDRSHGIIGVGQDDGKVR YVLPGMTPNGNLCVLSPPGSSSESSQDTPPVQDVVKDECTHMGTLTQCVRPDGKYCATSSTGHQYCWKPGEVGTQIASDG NHAATLNKVDVPVIAPVDAPKDKGDWRVDGKGTSTQIINNTYNNYNTTTFASTGSSGGGSSGGSSSSGGQSSGGGSDKSG GGDKSGGDKDTPGSGSPSGTGVLYKRNGKTLDTVVSGYQAKVNDLPFISGISSFLTISASGECPIFTLSASAYWPEMTFD YHCSGVFLSFLRSAGYIIFAIASYFAVRIATLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45758; Mature: 45627
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFRILVFFVILFISRFSFACEIGEPHWDPGQCLDRGEAYAIASASYQMWRSNQLKDSN CHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHCCCCCCCC IPGLQVVDCPMTDDGHIIGFGGYTTAPGYPSSDSCSNSLVYFQRVYPEGKTCLTRSPKSL CCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCHHH LGLTLPSGVRVPSTACYDGCSYDLDRSHGIIGVGQDDGKVRYVLPGMTPNGNLCVLSPPG HEEECCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCCC SSSESSQDTPPVQDVVKDECTHMGTLTQCVRPDGKYCATSSTGHQYCWKPGEVGTQIASD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCC GNHAATLNKVDVPVIAPVDAPKDKGDWRVDGKGTSTQIINNTYNNYNTTTFASTGSSGGG CCCEEEEECCCCCEEECCCCCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCC SSGGSSSSGGQSSGGGSDKSGGGDKSGGDKDTPGSGSPSGTGVLYKRNGKTLDTVVSGYQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCH AKVNDLPFISGISSFLTISASGECPIFTLSASAYWPEMTFDYHCSGVFLSFLRSAGYIIF HCCCCCCHHHCCCCEEEEECCCCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHCCEEEH AIASYFAVRIATLR HHHHHHHHEEEECC >Mature Secondary Structure SIFRILVFFVILFISRFSFACEIGEPHWDPGQCLDRGEAYAIASASYQMWRSNQLKDSN HHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHCCCCCCCC IPGLQVVDCPMTDDGHIIGFGGYTTAPGYPSSDSCSNSLVYFQRVYPEGKTCLTRSPKSL CCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCHHH LGLTLPSGVRVPSTACYDGCSYDLDRSHGIIGVGQDDGKVRYVLPGMTPNGNLCVLSPPG HEEECCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCCC SSSESSQDTPPVQDVVKDECTHMGTLTQCVRPDGKYCATSSTGHQYCWKPGEVGTQIASD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCC GNHAATLNKVDVPVIAPVDAPKDKGDWRVDGKGTSTQIINNTYNNYNTTTFASTGSSGGG CCCEEEEECCCCCEEECCCCCCCCCCEEECCCCCCEEEEECCCCCCCEEEEECCCCCCCC SSGGSSSSGGQSSGGGSDKSGGGDKSGGDKDTPGSGSPSGTGVLYKRNGKTLDTVVSGYQ CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHCCCH AKVNDLPFISGISSFLTISASGECPIFTLSASAYWPEMTFDYHCSGVFLSFLRSAGYIIF HCCCCCCHHHCCCCEEEEECCCCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHCCEEEH AIASYFAVRIATLR HHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA