| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198758
Identifier: 28198758
GI number: 28198758
Start: 1060374
End: 1061360
Strand: Reverse
Name: 28198758
Synonym: PD0853
Alternate gene names: NA
Gene position: 1061360-1060374 (Counterclockwise)
Preceding gene: 28198759
Following gene: 28198757
Centisome position: 42.12
GC content: 51.17
Gene sequence:
>987_bases GTGGACATTGCTTTGAAACAGCGACTGATCGGTGCCGTCATTCTAGTGGCGCTCGCCGTAATATTCTTACCGTTGCTGAT CAGGGGGCCCGCCCCTGATAGTGGTGTGGCCGATGTGCCCCTAAAAGCGCCATCTGCCCCCAACGACGCCAAGTTCGAAA CTCGTGAATTGCCTTTACCCTCACCCACTACTACAAGCAATACCACGCAAATAGGTAATGCACCACTGCAACCGCCCCAA AACATAGTAAAAGAAAGCTCAGATGTCCTTGACGCAAAAAGAACATTGCCACCTGACGTCGCAGCCGGTAACTATGCGGT TAACTTTGGGGCCTACTCCAGCCCTATTGATGCTAATAAGGTGATTGTGCGACTTAAACAGGCTCAATTGCCGGGATTCA GTGAAAAGACTCAGGTCAACGGTGCCGCTGCTTGGCTCGTACGTATTGGCCCATACGCTGACCAAGCACAGGCCGAAGCA GTGCGTCTGGAGGCAATCAAGATACGAAGCGACGTTAACGCACGTGTGGTTGTTTTAGACGCAAAGGCGGAAAGTCCCGT CGCTAAGCCTCAGGTGTCAAGTACACCTTCACAATTTAAATCAACCTCTTCTGTACCGGTACAAACTCAAACTTCTAAAC TACCGGTGAAACACACTCAACCTCCTGCTACTGGCGCTACCGCAGCTGCTACTAAATCGTCCTCCTCACCTACCAAGACA CCCGTAACATTCCCCATAGCACCTAAGACTAGTATCGGTTTCGCCGTGCAATTAGGTGCATTTGTTCGACTCGAAGACGC TAATGCCTTGTGTGATCGTGCGCGTGCAGCTGGTTTCAATGCATTCGTCGAGCAAGTCAACACTGATCAAGGTTCACTAC ACCGTGTCAGAGTTGGACCAGTGCCTAAACGGGAAGCTGCGGATCAACTTAAAGCGCAAGTGGCGGCTAAAATCGGCATT ATCGGCATGGTACGGTCACACCCTTGA
Upstream 100 bases:
>100_bases CTGAGGCTTTGCTACTGCTTGGTTCATTTGACAAGAGTGAAGCATTGCCAGTAGACGTATAATCTATAACGCTTTAATTT TAGTGTGGTGCTTTCCAACA
Downstream 100 bases:
>100_bases TTACCAATGTCCCTACAACTCCATGAAAGGCATTCGTACATGATCGGCTACAGTTCACCGTTATTAAAGCTGCCGCGATG ATTGATCTGATCCTAGCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MDIALKQRLIGAVILVALAVIFLPLLIRGPAPDSGVADVPLKAPSAPNDAKFETRELPLPSPTTTSNTTQIGNAPLQPPQ NIVKESSDVLDAKRTLPPDVAAGNYAVNFGAYSSPIDANKVIVRLKQAQLPGFSEKTQVNGAAAWLVRIGPYADQAQAEA VRLEAIKIRSDVNARVVVLDAKAESPVAKPQVSSTPSQFKSTSSVPVQTQTSKLPVKHTQPPATGATAAATKSSSSPTKT PVTFPIAPKTSIGFAVQLGAFVRLEDANALCDRARAAGFNAFVEQVNTDQGSLHRVRVGPVPKREAADQLKAQVAAKIGI IGMVRSHP
Sequences:
>Translated_328_residues MDIALKQRLIGAVILVALAVIFLPLLIRGPAPDSGVADVPLKAPSAPNDAKFETRELPLPSPTTTSNTTQIGNAPLQPPQ NIVKESSDVLDAKRTLPPDVAAGNYAVNFGAYSSPIDANKVIVRLKQAQLPGFSEKTQVNGAAAWLVRIGPYADQAQAEA VRLEAIKIRSDVNARVVVLDAKAESPVAKPQVSSTPSQFKSTSSVPVQTQTSKLPVKHTQPPATGATAAATKSSSSPTKT PVTFPIAPKTSIGFAVQLGAFVRLEDANALCDRARAAGFNAFVEQVNTDQGSLHRVRVGPVPKREAADQLKAQVAAKIGI IGMVRSHP >Mature_328_residues MDIALKQRLIGAVILVALAVIFLPLLIRGPAPDSGVADVPLKAPSAPNDAKFETRELPLPSPTTTSNTTQIGNAPLQPPQ NIVKESSDVLDAKRTLPPDVAAGNYAVNFGAYSSPIDANKVIVRLKQAQLPGFSEKTQVNGAAAWLVRIGPYADQAQAEA VRLEAIKIRSDVNARVVVLDAKAESPVAKPQVSSTPSQFKSTSSVPVQTQTSKLPVKHTQPPATGATAAATKSSSSPTKT PVTFPIAPKTSIGFAVQLGAFVRLEDANALCDRARAAGFNAFVEQVNTDQGSLHRVRVGPVPKREAADQLKAQVAAKIGI IGMVRSHP
Specific function: Unknown
COG id: COG3147
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34430; Mature: 34430
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIALKQRLIGAVILVALAVIFLPLLIRGPAPDSGVADVPLKAPSAPNDAKFETRELPLP CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPTTTSNTTQIGNAPLQPPQNIVKESSDVLDAKRTLPPDVAAGNYAVNFGAYSSPIDANK CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCC VIVRLKQAQLPGFSEKTQVNGAAAWLVRIGPYADQAQAEAVRLEAIKIRSDVNARVVVLD EEEEEHHHCCCCCCCHHCCCCEEEEEEEECCCCCHHHHHHHHEEEEEEECCCCEEEEEEE AKAESPVAKPQVSSTPSQFKSTSSVPVQTQTSKLPVKHTQPPATGATAAATKSSSSPTKT CCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC PVTFPIAPKTSIGFAVQLGAFVRLEDANALCDRARAAGFNAFVEQVNTDQGSLHRVRVGP CEEEECCCCCCCCEEEEECEEEEECCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECC VPKREAADQLKAQVAAKIGIIGMVRSHP CCCHHHHHHHHHHHHHHHCEEEEECCCC >Mature Secondary Structure MDIALKQRLIGAVILVALAVIFLPLLIRGPAPDSGVADVPLKAPSAPNDAKFETRELPLP CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPTTTSNTTQIGNAPLQPPQNIVKESSDVLDAKRTLPPDVAAGNYAVNFGAYSSPIDANK CCCCCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCC VIVRLKQAQLPGFSEKTQVNGAAAWLVRIGPYADQAQAEAVRLEAIKIRSDVNARVVVLD EEEEEHHHCCCCCCCHHCCCCEEEEEEEECCCCCHHHHHHHHEEEEEEECCCCEEEEEEE AKAESPVAKPQVSSTPSQFKSTSSVPVQTQTSKLPVKHTQPPATGATAAATKSSSSPTKT CCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC PVTFPIAPKTSIGFAVQLGAFVRLEDANALCDRARAAGFNAFVEQVNTDQGSLHRVRVGP CEEEECCCCCCCCEEEEECEEEEECCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEECC VPKREAADQLKAQVAAKIGIIGMVRSHP CCCHHHHHHHHHHHHHHHCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA