| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198712
Identifier: 28198712
GI number: 28198712
Start: 995251
End: 995739
Strand: Reverse
Name: 28198712
Synonym: PD0807
Alternate gene names: NA
Gene position: 995739-995251 (Counterclockwise)
Preceding gene: 28198713
Following gene: 28198710
Centisome position: 39.52
GC content: 51.53
Gene sequence:
>489_bases ATGTCCGCAAGAAACATCTTCACACTCATGCAGGCGGTAGGCAACCTGGAACCACTCACGATTGCGTTCCCAAAGTTCCA TGAATTCCAACGCGCAAAAAAAGGCGTATTGTTTACCGTGTTTCTCCGGCTTCGCCCCTGCCTCAACGGAAAAATACTTG TCTCCTGCATCACTGGTAATGGCGGTCTGAAAATTTGCGCCAGGTGCTCAATCTTAGCCAACTGTTTGTCGAATATCCGA TACACGCGTACGAGCGGCTCTCACAGATCACGCTCACACCGCCGATGCCAGCTCACAAGCGCCCAAAGCCTTATACACTG CCACACCGAGATGCTTAGGACCGAACGGATTACAGTTGGCATCCAGTTCGACTTCCCCCAGAAATCACCCCAAGCGCCAG TCCAAACAAGCCAGAAGTTGCGTATATTCACGCGACAACGAAGCGAGCCACCTCAGCACGTTCAAACAAAACCGTGTCAA AGCACTTGA
Upstream 100 bases:
>100_bases CAGCCGCTGCGCAACGTCAAAGGACTTTCCCGCGCCGAGCACACGTCTGCTGTAGTAACCCGGGCAACGTCTCCAATAAC ATCTCCTGATTACCGTTGAG
Downstream 100 bases:
>100_bases TGCAACGAACGAAAACATTAGCGATCCTCAGCAAGGCCAAGACACACATCTGCTCCAACAATCGGCTCACGCTCGACAAT ACTACAAAAACTGGACGTAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MSARNIFTLMQAVGNLEPLTIAFPKFHEFQRAKKGVLFTVFLRLRPCLNGKILVSCITGNGGLKICARCSILANCLSNIR YTRTSGSHRSRSHRRCQLTSAQSLIHCHTEMLRTERITVGIQFDFPQKSPQAPVQTSQKLRIFTRQRSEPPQHVQTKPCQ ST
Sequences:
>Translated_162_residues MSARNIFTLMQAVGNLEPLTIAFPKFHEFQRAKKGVLFTVFLRLRPCLNGKILVSCITGNGGLKICARCSILANCLSNIR YTRTSGSHRSRSHRRCQLTSAQSLIHCHTEMLRTERITVGIQFDFPQKSPQAPVQTSQKLRIFTRQRSEPPQHVQTKPCQ ST >Mature_161_residues SARNIFTLMQAVGNLEPLTIAFPKFHEFQRAKKGVLFTVFLRLRPCLNGKILVSCITGNGGLKICARCSILANCLSNIRY TRTSGSHRSRSHRRCQLTSAQSLIHCHTEMLRTERITVGIQFDFPQKSPQAPVQTSQKLRIFTRQRSEPPQHVQTKPCQS T
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18353; Mature: 18222
Theoretical pI: Translated: 11.49; Mature: 11.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 5.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSARNIFTLMQAVGNLEPLTIAFPKFHEFQRAKKGVLFTVFLRLRPCLNGKILVSCITGN CCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEECC GGLKICARCSILANCLSNIRYTRTSGSHRSRSHRRCQLTSAQSLIHCHTEMLRTERITVG CCHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE IQFDFPQKSPQAPVQTSQKLRIFTRQRSEPPQHVQTKPCQST EEECCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure SARNIFTLMQAVGNLEPLTIAFPKFHEFQRAKKGVLFTVFLRLRPCLNGKILVSCITGN CCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEEEECC GGLKICARCSILANCLSNIRYTRTSGSHRSRSHRRCQLTSAQSLIHCHTEMLRTERITVG CCHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHEEEEE IQFDFPQKSPQAPVQTSQKLRIFTRQRSEPPQHVQTKPCQST EEECCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA