| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is aspH
Identifier: 28198682
GI number: 28198682
Start: 958334
End: 959239
Strand: Reverse
Name: aspH
Synonym: PD0777
Alternate gene names: NA
Gene position: 959239-958334 (Counterclockwise)
Preceding gene: 28198683
Following gene: 28198679
Centisome position: 38.07
GC content: 52.21
Gene sequence:
>906_bases ATGATCAAATGGTCTTTGATAATCCTGTTTGTCGTATCAGTCCTTTACACCCACTTCAGAGGCCGTGTTCGCCATCGTTT AAGACGACAGCTATTTGACCACTCCACCTTCATGGCACCTATTAATGCACTGATGTACCTATGCTCACGCATACCCACCA CACCGTTCATCGACCCCGCCACGTTCTTCCCCGAGCTGATGCCCTTACGCACTCAATGGACTACGATCCGCGATGAAGCA CTCGCATTACAACGCATACAGAAGATACGAGCGGCCGAAGGCCATACCGACGCAGGATTCAACTCGTTCTTCCGACGTGG CTGGAAACGCTTCTACCTAAAGTGGTACGGCACCACACATCCATCTGCTATCGCGCTGTGTCCAAAAACCACAGCACTGC TGAAAAACATCCCTGCAATCAAAGCCGCCATGTTCGCCGAACTGCCGCCAGGTGGTGACTTGCGTCCACACCGCGACCCA TTCGCAGGTTCAATGCGTCTGCACTTAGGGTTGGCAACCCCAAACCACACAAGCTGCTTTATCGACGTCGACGGTCAGCG CTACAGCTGGCACGACGGCGAATGGGTCATGTTCGACGAGACCTACATCCACTACGCACGTAACGACACAGAGCACAATC GCATCATCCTATTCTGCGATATCGAACGCCCAATGCGCTGGCGTTGGGCACAAGCATTGAATCGCTTCGTTGCCAAACAT CTACTCGCTGCCGGCACCTCACCTAATCAAGCAGGTGACCAAACCGGCGGCATCAACCGCATGTTCCATCACTTCTACGC ATTACGCCTGAAAGCAAAAGCACTGAAACAATATAGCAACACCCTGTACCAAACGATCAAATGGAGCCTGTTCACCCTAT TTGTCATTGGCATCTTCCTGTTGTGA
Upstream 100 bases:
>100_bases CAATTCGCCGCCGCAATTCCAGCTAAATAGCACAACCACAAAACCCGCTCCTTACGCTACGATCACCCTTCTCATCAATA CTGCGATACGTGCTCTCTAC
Downstream 100 bases:
>100_bases ACCACAGCACCCGCAGCCCACGCATACTGAAAAAAACACACTAAACTGCGATCTCATCGGCACTTTCCCTCATCACCTCA TCCTTAACTTAGATCACATA
Product: aspartyl/asparaginyl beta-hydroxylase
Products: NA
Alternate protein names: Beta-Hydroxylase; Asparaginyl Beta-Hydroxylase; Membrane-Bound Beta-Hydroxylase; Aspartyl-Asparaginyl Beta-Hydroxylase; Aspartyl/Asparaginyl Beta-Hydroxylase Family Protein; Aspartyl/Asparaginyl Beta-Hydroxylase Family; Lipopolysaccharide Biosynthetic; Peptide-Aspartate Beta-Dioxygenase; Lipid A-Myristate Beta-Hydroxylase; Aspartyl/Asparaginyl Beta-Hydroxylase Transmembrane Protein; Beta-Hydroxylase Aspartyl/Asparaginyl Family; Peptide Aspartate B-Dioxygenase; Aspartyl/Asparaginyl-Beta-Hydroxylase; Hydroxylase; Peptide-Aspartate B-Dioxygenase; Aspartate Beta-Hydroxylase; Lipopolysaccharide Biosynthetic Protein; Fe(2+)/Alpha-Ketoglutarate-Dependent Dioxygenase LpxO; Dioxygenase; Aspartyl/Asparaginyl Beta-Hydroxylase Protein
Number of amino acids: Translated: 301; Mature: 301
Protein sequence:
>301_residues MIKWSLIILFVVSVLYTHFRGRVRHRLRRQLFDHSTFMAPINALMYLCSRIPTTPFIDPATFFPELMPLRTQWTTIRDEA LALQRIQKIRAAEGHTDAGFNSFFRRGWKRFYLKWYGTTHPSAIALCPKTTALLKNIPAIKAAMFAELPPGGDLRPHRDP FAGSMRLHLGLATPNHTSCFIDVDGQRYSWHDGEWVMFDETYIHYARNDTEHNRIILFCDIERPMRWRWAQALNRFVAKH LLAAGTSPNQAGDQTGGINRMFHHFYALRLKAKALKQYSNTLYQTIKWSLFTLFVIGIFLL
Sequences:
>Translated_301_residues MIKWSLIILFVVSVLYTHFRGRVRHRLRRQLFDHSTFMAPINALMYLCSRIPTTPFIDPATFFPELMPLRTQWTTIRDEA LALQRIQKIRAAEGHTDAGFNSFFRRGWKRFYLKWYGTTHPSAIALCPKTTALLKNIPAIKAAMFAELPPGGDLRPHRDP FAGSMRLHLGLATPNHTSCFIDVDGQRYSWHDGEWVMFDETYIHYARNDTEHNRIILFCDIERPMRWRWAQALNRFVAKH LLAAGTSPNQAGDQTGGINRMFHHFYALRLKAKALKQYSNTLYQTIKWSLFTLFVIGIFLL >Mature_301_residues MIKWSLIILFVVSVLYTHFRGRVRHRLRRQLFDHSTFMAPINALMYLCSRIPTTPFIDPATFFPELMPLRTQWTTIRDEA LALQRIQKIRAAEGHTDAGFNSFFRRGWKRFYLKWYGTTHPSAIALCPKTTALLKNIPAIKAAMFAELPPGGDLRPHRDP FAGSMRLHLGLATPNHTSCFIDVDGQRYSWHDGEWVMFDETYIHYARNDTEHNRIILFCDIERPMRWRWAQALNRFVAKH LLAAGTSPNQAGDQTGGINRMFHHFYALRLKAKALKQYSNTLYQTIKWSLFTLFVIGIFLL
Specific function: Unknown
COG id: COG3555
COG function: function code O; Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI14589866, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI258613943, Length=185, Percent_Identity=27.027027027027, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35073; Mature: 35073
Theoretical pI: Translated: 10.55; Mature: 10.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKWSLIILFVVSVLYTHFRGRVRHRLRRQLFDHSTFMAPINALMYLCSRIPTTPFIDPA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHH TFFPELMPLRTQWTTIRDEALALQRIQKIRAAEGHTDAGFNSFFRRGWKRFYLKWYGTTH HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEECCCC PSAIALCPKTTALLKNIPAIKAAMFAELPPGGDLRPHRDPFAGSMRLHLGLATPNHTSCF CCEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE IDVDGQRYSWHDGEWVMFDETYIHYARNDTEHNRIILFCDIERPMRWRWAQALNRFVAKH EEECCCEEECCCCCEEEEEHHEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LLAAGTSPNQAGDQTGGINRMFHHFYALRLKAKALKQYSNTLYQTIKWSLFTLFVIGIFL HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH L C >Mature Secondary Structure MIKWSLIILFVVSVLYTHFRGRVRHRLRRQLFDHSTFMAPINALMYLCSRIPTTPFIDPA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCHH TFFPELMPLRTQWTTIRDEALALQRIQKIRAAEGHTDAGFNSFFRRGWKRFYLKWYGTTH HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEEEECCCC PSAIALCPKTTALLKNIPAIKAAMFAELPPGGDLRPHRDPFAGSMRLHLGLATPNHTSCF CCEEEECCCHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEE IDVDGQRYSWHDGEWVMFDETYIHYARNDTEHNRIILFCDIERPMRWRWAQALNRFVAKH EEECCCEEECCCCCEEEEEHHEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LLAAGTSPNQAGDQTGGINRMFHHFYALRLKAKALKQYSNTLYQTIKWSLFTLFVIGIFL HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH L C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA