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The map label for this gene is yicC [H]

Identifier: 28198627

GI number: 28198627

Start: 884497

End: 885360

Strand: Reverse

Name: yicC [H]

Synonym: PD0721

Alternate gene names: 28198627

Gene position: 885360-884497 (Counterclockwise)

Preceding gene: 28198633

Following gene: 28198626

Centisome position: 35.14

GC content: 54.63

Gene sequence:

>864_bases
ATGATCCATAGCATGACTGCGTTCGCCGCAGATGAGCACCTTACACCATGGGGCCTGTTGGCCTGCGAGCTGCGTTCAGT
CAACCACCGCTTCCTGGATATCGTCATACGCCTTCCTGAAGAACTCCGTGCTCTGGAATCACAACTACGTGAGCGCGTGG
CCGCACGGGTCAGCCGCGGCAAGCTCGATTTGACGGTACGCCTATCACCACAGGAGATCCACACTGGGAAGCTGGTAGTG
AACGAACTGCTGTTATCCCATCTCAGCACCCTGGCACTACGCCTATCAGCACAGTTCCCCGCGTTACGTGTCACATTTGC
AGAGCTGCTACAGATCCCTGGTGTCCTGAAGGGTGAGCAGATCGACATGACCACGTTACAAGGACACGCCGTGGCGCTGC
TAGATAAGGTACTGGATAACTTCATTGCCACGCGGGAACGCGAAGGTCTCAAAATGCAAGCAATGATCGCGCAACGTGCT
AGTGCCATTGAACGCATCGTCGGTGAGGTTCGCACCCTGATTCCCACCATCCGCGAAGGCCAACACAACAAACTAAACGC
TCGCATGAATCACCTGTCGTATCCCGTCGATCACGGTCGCATTGAGCAAGAGTTGGTGCTATGGCTACAAAAGCTAGACG
TGGATGAGGAGTTGGATCGACTCAGCAGTCACATCAGCGAACTACATCGCATCCTCCAGCAACGCGAACCCGTCGGGCGG
CGCCTGGATTTTCTAATGCAAGAATTCAACCGCGAAGCCAACACACTCGGCTCAAAATCGGTGGACAGCCGCACTTCTAA
TGCCACGATTGAGCTGAAGGTACTGATCGACCAGATCCGCGAGCAAGTGCAGAACATCGAATAA

Upstream 100 bases:

>100_bases
CATATTGGTTTTTTCTTATTAGTCATAGTGAATGAAAAATTGAACCACCTTAAGGCCCCGCATGGGCGCGCTAGGGTACC
ATCCATATTTTGAGAGCAAT

Downstream 100 bases:

>100_bases
CCGTAATAGTGCCTTTAACGGCAGTGACATCGCACACCAAGTATCCACCTGATCCATTGTCCACTGAGCAATCTCTATTC
TATGCGCGGCACCCTCTACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MIHSMTAFAADEHLTPWGLLACELRSVNHRFLDIVIRLPEELRALESQLRERVAARVSRGKLDLTVRLSPQEIHTGKLVV
NELLLSHLSTLALRLSAQFPALRVTFAELLQIPGVLKGEQIDMTTLQGHAVALLDKVLDNFIATREREGLKMQAMIAQRA
SAIERIVGEVRTLIPTIREGQHNKLNARMNHLSYPVDHGRIEQELVLWLQKLDVDEELDRLSSHISELHRILQQREPVGR
RLDFLMQEFNREANTLGSKSVDSRTSNATIELKVLIDQIREQVQNIE

Sequences:

>Translated_287_residues
MIHSMTAFAADEHLTPWGLLACELRSVNHRFLDIVIRLPEELRALESQLRERVAARVSRGKLDLTVRLSPQEIHTGKLVV
NELLLSHLSTLALRLSAQFPALRVTFAELLQIPGVLKGEQIDMTTLQGHAVALLDKVLDNFIATREREGLKMQAMIAQRA
SAIERIVGEVRTLIPTIREGQHNKLNARMNHLSYPVDHGRIEQELVLWLQKLDVDEELDRLSSHISELHRILQQREPVGR
RLDFLMQEFNREANTLGSKSVDSRTSNATIELKVLIDQIREQVQNIE
>Mature_287_residues
MIHSMTAFAADEHLTPWGLLACELRSVNHRFLDIVIRLPEELRALESQLRERVAARVSRGKLDLTVRLSPQEIHTGKLVV
NELLLSHLSTLALRLSAQFPALRVTFAELLQIPGVLKGEQIDMTTLQGHAVALLDKVLDNFIATREREGLKMQAMIAQRA
SAIERIVGEVRTLIPTIREGQHNKLNARMNHLSYPVDHGRIEQELVLWLQKLDVDEELDRLSSHISELHRILQQREPVGR
RLDFLMQEFNREANTLGSKSVDSRTSNATIELKVLIDQIREQVQNIE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=287, Percent_Identity=44.5993031358885, Blast_Score=246, Evalue=1e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 32732; Mature: 32732

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSMTAFAADEHLTPWGLLACELRSVNHRFLDIVIRLPEELRALESQLRERVAARVSRG
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
KLDLTVRLSPQEIHTGKLVVNELLLSHLSTLALRLSAQFPALRVTFAELLQIPGVLKGEQ
CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
IDMTTLQGHAVALLDKVLDNFIATREREGLKMQAMIAQRASAIERIVGEVRTLIPTIREG
CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QHNKLNARMNHLSYPVDHGRIEQELVLWLQKLDVDEELDRLSSHISELHRILQQREPVGR
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
RLDFLMQEFNREANTLGSKSVDSRTSNATIELKVLIDQIREQVQNIE
HHHHHHHHHCHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIHSMTAFAADEHLTPWGLLACELRSVNHRFLDIVIRLPEELRALESQLRERVAARVSRG
CCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
KLDLTVRLSPQEIHTGKLVVNELLLSHLSTLALRLSAQFPALRVTFAELLQIPGVLKGEQ
CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCC
IDMTTLQGHAVALLDKVLDNFIATREREGLKMQAMIAQRASAIERIVGEVRTLIPTIREG
CCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QHNKLNARMNHLSYPVDHGRIEQELVLWLQKLDVDEELDRLSSHISELHRILQQREPVGR
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
RLDFLMQEFNREANTLGSKSVDSRTSNATIELKVLIDQIREQVQNIE
HHHHHHHHHCHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664418; 7686882; 9278503; 1925027 [H]