| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is engB [H]
Identifier: 28198564
GI number: 28198564
Start: 805183
End: 805794
Strand: Reverse
Name: engB [H]
Synonym: PD0656
Alternate gene names: 28198564
Gene position: 805794-805183 (Counterclockwise)
Preceding gene: 28198565
Following gene: 28198563
Centisome position: 31.98
GC content: 52.45
Gene sequence:
>612_bases ATGTCATCACCACTCGAATGTGCCAAATACCTCCTCTCAGCCCACACACCCCATCAACTACCGTCCGATGACGGAAGCGA AGTTGCCTTTGCCGGACGTTCTAATGCTGGAAAATCCAGCGTACTAAACACCTTAACCCGTCAAAACGCACTCGCCCGCG TCTCCAAAACTCCAGGCCGCACCCAGCAACTGGTCTACTTCACAGTGACACCGCAACGCTACCTGGTTGACCTCCCCGGC TATGGCTACGCCAAAGTCCCCAAAGAACTGCAAATACACTGGCAAGCATTTATTGACACCTACTTCCATCACCGCCAATC CCTCCGTGGACTGGTGGTGGTAATGGACATTCGCCACCCACTCAAAGAATACGACCTACAAATGCTCGCCTACGCCAGAC AACGCGGCCTACCCGCACAGGCACTACTGACTAAAGCCGACAAACTCGGCAGAGGCCAACAGGCACAAACACTACAAAAA GTGCGCAATGAACTCACCAAACACTTCGCTGACCATATCAACATACAAACCTTCTCCAGCAAATCGCGCCAAGGTGTGGA GCAATTGCATACAGTGATCGAAACCTGGTTAGGCTTAGCAAGATCCGGCTGA
Upstream 100 bases:
>100_bases ATCAAAACTTCTTGTTTGTTTGACCCTCAGACCATCCATTAAAACTGTCCTCATGCCACCAAACGCACAGCACAGCCCGC AGACGTGCGATCCTAAACAG
Downstream 100 bases:
>100_bases ATCTAAAAAAACACGCAAACCCATCACAACCCTTTGATTTATATAAAATAGAAAAAATTTTTCACACACAGATAAACACC CATGCGACACCCCTATAGAA
Product: ribosome biogenesis GTP-binding protein YsxC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MSSPLECAKYLLSAHTPHQLPSDDGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDLPG YGYAKVPKELQIHWQAFIDTYFHHRQSLRGLVVVMDIRHPLKEYDLQMLAYARQRGLPAQALLTKADKLGRGQQAQTLQK VRNELTKHFADHINIQTFSSKSRQGVEQLHTVIETWLGLARSG
Sequences:
>Translated_203_residues MSSPLECAKYLLSAHTPHQLPSDDGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDLPG YGYAKVPKELQIHWQAFIDTYFHHRQSLRGLVVVMDIRHPLKEYDLQMLAYARQRGLPAQALLTKADKLGRGQQAQTLQK VRNELTKHFADHINIQTFSSKSRQGVEQLHTVIETWLGLARSG >Mature_202_residues SSPLECAKYLLSAHTPHQLPSDDGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGRTQQLVYFTVTPQRYLVDLPGY GYAKVPKELQIHWQAFIDTYFHHRQSLRGLVVVMDIRHPLKEYDLQMLAYARQRGLPAQALLTKADKLGRGQQAQTLQKV RNELTKHFADHINIQTFSSKSRQGVEQLHTVIETWLGLARSG
Specific function: Necessary for normal cell division and for the maintenance of normal septation [H]
COG id: COG0218
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI56549685, Length=163, Percent_Identity=31.2883435582822, Blast_Score=75, Evalue=6e-14, Organism=Escherichia coli, GI145693205, Length=188, Percent_Identity=53.1914893617021, Blast_Score=198, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6320543, Length=133, Percent_Identity=30.8270676691729, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019987 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 22863; Mature: 22732
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPLECAKYLLSAHTPHQLPSDDGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGR CCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC TQQLVYFTVTPQRYLVDLPGYGYAKVPKELQIHWQAFIDTYFHHRQSLRGLVVVMDIRHP CEEEEEEEECCHHEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCC LKEYDLQMLAYARQRGLPAQALLTKADKLGRGQQAQTLQKVRNELTKHFADHINIQTFSS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEECCC KSRQGVEQLHTVIETWLGLARSG HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SSPLECAKYLLSAHTPHQLPSDDGSEVAFAGRSNAGKSSVLNTLTRQNALARVSKTPGR CCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC TQQLVYFTVTPQRYLVDLPGYGYAKVPKELQIHWQAFIDTYFHHRQSLRGLVVVMDIRHP CEEEEEEEECCHHEEEECCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCC LKEYDLQMLAYARQRGLPAQALLTKADKLGRGQQAQTLQKVRNELTKHFADHINIQTFSS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEECCC KSRQGVEQLHTVIETWLGLARSG HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]