| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is 28198438
Identifier: 28198438
GI number: 28198438
Start: 645369
End: 647570
Strand: Reverse
Name: 28198438
Synonym: PD0528
Alternate gene names: NA
Gene position: 647570-645369 (Counterclockwise)
Preceding gene: 28198439
Following gene: 77747646
Centisome position: 25.7
GC content: 50.54
Gene sequence:
>2202_bases ATGGAAAGAAAGAATCATAAAAAAACAACATTAGCCACCCTCATCTCCGTACTACTGATGGGAAGCGCTGGTGCCACCTA TGCAAACTCGCCATCCATATCGGAGAAACTAGATTTGGCGACACAGCATCTTGATGGTGCTGCATCCACTGGCGAAGCAA TTTCCTCCGATGGGAAAACCATCGCAACATCCATCAATAATCGTACTCGTGCATTCCTGTTATCCGGTGACAATTGGGCA ACAAAAACCGAGCTTGGCTCATTAAAAAGCGATAGTTCAGGTACTTCTATTGTTAGAGCGCTCTCTGCGGATGGAAAAAT CGCTGCGGGAATATCCTCAGTTGATTCCAGTTCTACTCAACTGCATGCAACCATTTGGTCAGGCGACAACTGGGCAACAA AAACGACTCTCGGAACGTTAGCAACAAATAACGGGGGTGACTCTGTTGTTTACGCACTCTCCGCCGATGGGAAAGTCGCT GCAGGACAAACCGCAGCCTCGATAGGTACTCTTCATGCGGTTATCTGGTCGGGAGACAATTGGGCAACAAAAACGGATCT AGGAACAATAAGAAGCGATGGTACAGGTGATTCTATGGTTAAGGCGCTTTCCGCTGATGGGAAAATCGCCGTTGGCTCTG CTGCCTCTGATATCAAAACCCCTGTTAATGGGATGTACGCAGGAGGCGTCCTTACAGGGCCAAATAGTGTCCGCGCTATT GCCTGGTCAGGCGACAATTGGGCAACAAAAACTGACCTCGGCACGTTAAGAAGCGATAACCTAGGGGCCGCCGTTGCCAA TGCGATCTCCGCCGACGGGAAAGTGATCGGTGGGGCTTCTCACCATTACGTCACCACTGAATACTACCGCGCGAATGCTG ATCAGCTAGCAACCATCTGGTCAGGTGGCAACTGGGCAACAAAAACGAACTTAGGATCACTCAGAAGCGATAACTCAGGT GCATCTTTGGTGGCAGCACTCTCTGCCGATGGCAGCATCGCAGGTGGAGCCGCTCTAAACGACGCTAATGCCACGCGAGC CATCATCTGGTCAGGCAGCCACTGGGCAACAAAAACAGATTTAGGAACACTCAAAAGCGATAACTCTGGAAATTCCGAGG TGGTAGCACTCTCCCCTGATGGCAGCGTCGCCGTAGGAACTGCTGCTACTGATTCAGGCAGCTCACATGCCACCGTCTGG AAAATCACCTATCCAACAGAATCAACAAGTACATCAGACAGTACCACTAACACCCAAACACCTTCACAACCTTCACAACC ATCCGTCGTCACGGTCGATGCAGACAACACGAAAAAAACTTTATCGCAGTTGGGTGCAGAAACCTTCTCGGTGATGGACT TACAACGTCAAGGATTGACCCGCCTGCAACAACACTGTCAGATAGACGCGGCGGGGCAATCCTGTTGGGGTATACAGACT GCGATCAGCTCTATAGACGGCAACCGAGATAAAGTCGCCGGTATCAGACTGGGTCATGGGTTCACCGAAACATTTTCTGC CGGCGTCTCCCTGGATCGCTCCCTGTCCCGCTCCCTGCCAGATAGTTACCTGAAAAATAATGGCAATCTGGGTGCAGGCC TGTATGCACAATGGAATACCGCTTTCAAAGGGAGCCAATGGTATGTGCGTCCGGCCGTGGCATTTAATCGCTACAACGTC ACCGTGCAACGTCCAGTCCTTGAAAATACAGAGGCGGGCATCGGCACCAGTCGTATGAAGGGCCGTGGCGCTTCGCTGGA AGCAGGACAAACCTTTAAGTCCGATCATGGCGTTTTGTTAGGCTGGCATCTAGGAGGACGTTACAACAACGTTTCCCGTG CTGAATACAGCGAACAAAATGCTGCGTTCCCAACCACTTACGGCAAGGCGAGCTTCAAACGCACTTCTGCTTATCTTGGT GCAGACGCAACCATCCCATTAACCACGAACCTAAAATGGATGGCTGCTGTTGAAATAGACCGGGCACTGAAAAACCGTGA TGCCGTGTACAGTGCACAAGCCGATTATATTGGCAGCTTTAACCATCGTGCCGGAATCAAAGGCACCATTGCGACACTAT CAAGCGGATTGCAATACACCATCAGTGAAAAAATATTGCTTGGATTAACGCTGGATGTGAATCAAACCGCCTTTGGCGAT ATCGCACGTGGCGGAACGTTCACTGTAGGCGGACATTTCTAA
Upstream 100 bases:
>100_bases GGTGCCGCACTGAAAGAGGAATCACCCTAAGGATGCGTCATGGATACAACCCAGTGATTGCAATCACTGGCTGACAACCG CAAAAATTCAAGGACATTTT
Downstream 100 bases:
>100_bases GAGCCGCAGCTCACATCATTATCCTTCACATGCAATACAAACTTGAGAGCCGCACATGCGGCTCTCTTTTTTTATTCATG TATTCATGTTTTTTTTAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 733; Mature: 733
Protein sequence:
>733_residues MERKNHKKTTLATLISVLLMGSAGATYANSPSISEKLDLATQHLDGAASTGEAISSDGKTIATSINNRTRAFLLSGDNWA TKTELGSLKSDSSGTSIVRALSADGKIAAGISSVDSSSTQLHATIWSGDNWATKTTLGTLATNNGGDSVVYALSADGKVA AGQTAASIGTLHAVIWSGDNWATKTDLGTIRSDGTGDSMVKALSADGKIAVGSAASDIKTPVNGMYAGGVLTGPNSVRAI AWSGDNWATKTDLGTLRSDNLGAAVANAISADGKVIGGASHHYVTTEYYRANADQLATIWSGGNWATKTNLGSLRSDNSG ASLVAALSADGSIAGGAALNDANATRAIIWSGSHWATKTDLGTLKSDNSGNSEVVALSPDGSVAVGTAATDSGSSHATVW KITYPTESTSTSDSTTNTQTPSQPSQPSVVTVDADNTKKTLSQLGAETFSVMDLQRQGLTRLQQHCQIDAAGQSCWGIQT AISSIDGNRDKVAGIRLGHGFTETFSAGVSLDRSLSRSLPDSYLKNNGNLGAGLYAQWNTAFKGSQWYVRPAVAFNRYNV TVQRPVLENTEAGIGTSRMKGRGASLEAGQTFKSDHGVLLGWHLGGRYNNVSRAEYSEQNAAFPTTYGKASFKRTSAYLG ADATIPLTTNLKWMAAVEIDRALKNRDAVYSAQADYIGSFNHRAGIKGTIATLSSGLQYTISEKILLGLTLDVNQTAFGD IARGGTFTVGGHF
Sequences:
>Translated_733_residues MERKNHKKTTLATLISVLLMGSAGATYANSPSISEKLDLATQHLDGAASTGEAISSDGKTIATSINNRTRAFLLSGDNWA TKTELGSLKSDSSGTSIVRALSADGKIAAGISSVDSSSTQLHATIWSGDNWATKTTLGTLATNNGGDSVVYALSADGKVA AGQTAASIGTLHAVIWSGDNWATKTDLGTIRSDGTGDSMVKALSADGKIAVGSAASDIKTPVNGMYAGGVLTGPNSVRAI AWSGDNWATKTDLGTLRSDNLGAAVANAISADGKVIGGASHHYVTTEYYRANADQLATIWSGGNWATKTNLGSLRSDNSG ASLVAALSADGSIAGGAALNDANATRAIIWSGSHWATKTDLGTLKSDNSGNSEVVALSPDGSVAVGTAATDSGSSHATVW KITYPTESTSTSDSTTNTQTPSQPSQPSVVTVDADNTKKTLSQLGAETFSVMDLQRQGLTRLQQHCQIDAAGQSCWGIQT AISSIDGNRDKVAGIRLGHGFTETFSAGVSLDRSLSRSLPDSYLKNNGNLGAGLYAQWNTAFKGSQWYVRPAVAFNRYNV TVQRPVLENTEAGIGTSRMKGRGASLEAGQTFKSDHGVLLGWHLGGRYNNVSRAEYSEQNAAFPTTYGKASFKRTSAYLG ADATIPLTTNLKWMAAVEIDRALKNRDAVYSAQADYIGSFNHRAGIKGTIATLSSGLQYTISEKILLGLTLDVNQTAFGD IARGGTFTVGGHF >Mature_733_residues MERKNHKKTTLATLISVLLMGSAGATYANSPSISEKLDLATQHLDGAASTGEAISSDGKTIATSINNRTRAFLLSGDNWA TKTELGSLKSDSSGTSIVRALSADGKIAAGISSVDSSSTQLHATIWSGDNWATKTTLGTLATNNGGDSVVYALSADGKVA AGQTAASIGTLHAVIWSGDNWATKTDLGTIRSDGTGDSMVKALSADGKIAVGSAASDIKTPVNGMYAGGVLTGPNSVRAI AWSGDNWATKTDLGTLRSDNLGAAVANAISADGKVIGGASHHYVTTEYYRANADQLATIWSGGNWATKTNLGSLRSDNSG ASLVAALSADGSIAGGAALNDANATRAIIWSGSHWATKTDLGTLKSDNSGNSEVVALSPDGSVAVGTAATDSGSSHATVW KITYPTESTSTSDSTTNTQTPSQPSQPSVVTVDADNTKKTLSQLGAETFSVMDLQRQGLTRLQQHCQIDAAGQSCWGIQT AISSIDGNRDKVAGIRLGHGFTETFSAGVSLDRSLSRSLPDSYLKNNGNLGAGLYAQWNTAFKGSQWYVRPAVAFNRYNV TVQRPVLENTEAGIGTSRMKGRGASLEAGQTFKSDHGVLLGWHLGGRYNNVSRAEYSEQNAAFPTTYGKASFKRTSAYLG ADATIPLTTNLKWMAAVEIDRALKNRDAVYSAQADYIGSFNHRAGIKGTIATLSSGLQYTISEKILLGLTLDVNQTAFGD IARGGTFTVGGHF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76162; Mature: 76162
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERKNHKKTTLATLISVLLMGSAGATYANSPSISEKLDLATQHLDGAASTGEAISSDGKT CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCE IATSINNRTRAFLLSGDNWATKTELGSLKSDSSGTSIVRALSADGKIAAGISSVDSSSTQ EEEECCCCEEEEEEECCCCCCHHHCCCCCCCCCCCHHHEECCCCCCEEECCCCCCCCCCE LHATIWSGDNWATKTTLGTLATNNGGDSVVYALSADGKVAAGQTAASIGTLHAVIWSGDN EEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEECCCCEECCCHHHHHCEEEEEEECCCC WATKTDLGTIRSDGTGDSMVKALSADGKIAVGSAASDIKTPVNGMYAGGVLTGPNSVRAI CEEECCCCCCCCCCCCHHHHHHHCCCCCEEECCCCHHCCCCCCCEEECCEEECCCCEEEE AWSGDNWATKTDLGTLRSDNLGAAVANAISADGKVIGGASHHYVTTEYYRANADQLATIW EECCCCCCEECCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCEEEEE SGGNWATKTNLGSLRSDNSGASLVAALSADGSIAGGAALNDANATRAIIWSGSHWATKTD ECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCCEEEEECCCCCCCCCC LGTLKSDNSGNSEVVALSPDGSVAVGTAATDSGSSHATVWKITYPTESTSTSDSTTNTQT CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCC PSQPSQPSVVTVDADNTKKTLSQLGAETFSVMDLQRQGLTRLQQHCQIDAAGQSCWGIQT CCCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHH AISSIDGNRDKVAGIRLGHGFTETFSAGVSLDRSLSRSLPDSYLKNNGNLGAGLYAQWNT HHHHCCCCCCEEEEEEECCCHHHHHHCCCCHHHHHHHCCCHHHHHCCCCCCCCEEEEECC AFKGSQWYVRPAVAFNRYNVTVQRPVLENTEAGIGTSRMKGRGASLEAGQTFKSDHGVLL CCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEE GWHLGGRYNNVSRAEYSEQNAAFPTTYGKASFKRTSAYLGADATIPLTTNLKWMAAVEID EEEECCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHEECCCCEEEEECCCEEEEEEEHH RALKNRDAVYSAQADYIGSFNHRAGIKGTIATLSSGLQYTISEKILLGLTLDVNQTAFGD HHHCCCCCEEECCCHHHCCCCCCCCCCEEHHHHHCCCEEEECCEEEEEEEEECCCCCCCH IARGGTFTVGGHF HCCCCEEEECCCC >Mature Secondary Structure MERKNHKKTTLATLISVLLMGSAGATYANSPSISEKLDLATQHLDGAASTGEAISSDGKT CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCE IATSINNRTRAFLLSGDNWATKTELGSLKSDSSGTSIVRALSADGKIAAGISSVDSSSTQ EEEECCCCEEEEEEECCCCCCHHHCCCCCCCCCCCHHHEECCCCCCEEECCCCCCCCCCE LHATIWSGDNWATKTTLGTLATNNGGDSVVYALSADGKVAAGQTAASIGTLHAVIWSGDN EEEEEECCCCEEEEEEEEEEEECCCCCEEEEEEECCCCEECCCHHHHHCEEEEEEECCCC WATKTDLGTIRSDGTGDSMVKALSADGKIAVGSAASDIKTPVNGMYAGGVLTGPNSVRAI CEEECCCCCCCCCCCCHHHHHHHCCCCCEEECCCCHHCCCCCCCEEECCEEECCCCEEEE AWSGDNWATKTDLGTLRSDNLGAAVANAISADGKVIGGASHHYVTTEYYRANADQLATIW EECCCCCCEECCCCCCCCCCCCHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCEEEEE SGGNWATKTNLGSLRSDNSGASLVAALSADGSIAGGAALNDANATRAIIWSGSHWATKTD ECCCEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCEECCCCCCEEEEECCCCCCCCCC LGTLKSDNSGNSEVVALSPDGSVAVGTAATDSGSSHATVWKITYPTESTSTSDSTTNTQT CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCC PSQPSQPSVVTVDADNTKKTLSQLGAETFSVMDLQRQGLTRLQQHCQIDAAGQSCWGIQT CCCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCEEECCCCCHHHHHH AISSIDGNRDKVAGIRLGHGFTETFSAGVSLDRSLSRSLPDSYLKNNGNLGAGLYAQWNT HHHHCCCCCCEEEEEEECCCHHHHHHCCCCHHHHHHHCCCHHHHHCCCCCCCCEEEEECC AFKGSQWYVRPAVAFNRYNVTVQRPVLENTEAGIGTSRMKGRGASLEAGQTFKSDHGVLL CCCCCEEEEEEEEEEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCEEE GWHLGGRYNNVSRAEYSEQNAAFPTTYGKASFKRTSAYLGADATIPLTTNLKWMAAVEID EEEECCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHEECCCCEEEEECCCEEEEEEEHH RALKNRDAVYSAQADYIGSFNHRAGIKGTIATLSSGLQYTISEKILLGLTLDVNQTAFGD HHHCCCCCEEECCCHHHCCCCCCCCCCEEHHHHHCCCEEEECCEEEEEEEEECCCCCCCH IARGGTFTVGGHF HCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA