| Definition | Xylella fastidiosa Temecula1, complete genome. |
|---|---|
| Accession | NC_004556 |
| Length | 2,519,802 |
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The map label for this gene is zwf [H]
Identifier: 28198263
GI number: 28198263
Start: 436386
End: 437888
Strand: Reverse
Name: zwf [H]
Synonym: PD0346
Alternate gene names: 28198263
Gene position: 437888-436386 (Counterclockwise)
Preceding gene: 28198265
Following gene: 28198262
Centisome position: 17.38
GC content: 55.56
Gene sequence:
>1503_bases ATGCTGCTCACGCAAACAAAAACACCCCCACACCAACAAACGTTAACATCCAAATCCGAGACCAGGTCCATGCACAACAC CCTCTTATTGTTTGGCGCCACCGGCGACCTCGCCCAACGCTATCTCTTCCCCTCCTTACTGCAACTGTTTACTGATGGCT TATTGCCACAAGACTTCCGCATTCGTGCTCTGGCCTTGTCACCCCATAACACCACACAATTCCGCGACATCCTGCGCACG CGCTTGGAACAAGCACTACCCATCGCCAACACCGCGCACATCCAAGCCCTACTACAACGTGTCGACTACCTTTCCGTAGA CTTGAACGACCCAACATCAATCGCCGAAGCAGTCCGAGATCTGACGGAACATCCCTGCATCAGCTACTTGGCAATCCCAC CAGGCCTGTATACCAACACCGCCCTAGGATTGGCACAAGGAGGGGCACTGCAGACACCACACCGATTGATGCTGGAAAAA CCGATCGGACGCGACTCAATAAACGCACGCGAAATCCTAAACACCATCGGCACACTGATTGACGAAGATCGCATCTTCCG CGTAGACCACTATCTAGGCAAAGCAGCAGTGCAGAACCTCGTCGCACTGCGGTTCGGAAACACCCTGCTAGAAGCGGTAT GGAACCGAAACCACATTGAGTCCGTACACATCCTCATCGCCGAAACCGAAGGCGTCGATGGCCGCAATGCTTACTACGCA CGTGCTGGCGCACTACGTGACATGATGCAAAGCCACATCCTGCAACTCCTATGCCTGGTCGCTATGGAACCCCCGGTCTC TATGGAAGCCGACCGCATACGCGACGAAAAAGTCAAAGTCCTGCGCGCACTACGCCCACTGAACGCCCAAAACGCCGCAA TGCACAGCGTGCGCGGACGCTACAGCGCGGGCACCATTAACAGCCAACCAGTGCCAGCCTATCAACCACCAGAAGGCAGC AATGTAGAGACCTTTGTCGGTGTCACCGCATACATCGACAACTGGCGCTGGGCGGGCGTACCGTTCCATCTATGCACAGG AAAACGCTTGGCCGAACGCTCAACCCAAATCGTCGTCACCCTCAAACCCGTCACACACTGGCTATTTGAACGTCCAAACC GGAACAATGCAGCACCAAACCGCCTGTGCTTCAAACTACAGCCCCAGGAAAATATCGAACTAAACCTGATGAGCAGCCTG GCCGGCCCCGAATGGGGAACCCTAGAACTGCAACCGCTGGAATTGGAGTTATCCGTCCCAACCGGGAAACATCGCCACAT CGCCTATGAGCGCCTTTTCCTCGACGCATTCAACGGCAACCCTGCGCTATTTGTACGTCACGACGAAGTCACAGAAGCCT GGGCTTGGATCGACAGCATCAGCAATGCCTGGGAACTGTCCGACTTACCACTGCAACCCTACCCCGCCGGCGGCTGGGGC CCACCTCAAGCCCACCAATTTCTGCCGCCATTGGGGATTGATGGCCATGGAAACAACGCATGA
Upstream 100 bases:
>100_bases ACAAGCGGGTTCGCACTATCACCCGCTCCCATCCCTACTCCACCAACCCAGCACTAGCACATACACCACCAAACGCAACG ATTAAGCCACGCATCAACAC
Downstream 100 bases:
>100_bases ACGCACCACAGGCTCCCGTACTGGTCGCAGACATTGGAGGGACTAACGCCCGCTTTGCGCTCGCCAACCCCACCCTAACC TCAGCACCACTGCTGAACGA
Product: glucose-6-phosphate 1-dehydrogenase
Products: NA
Alternate protein names: G6PD [H]
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MLLTQTKTPPHQQTLTSKSETRSMHNTLLLFGATGDLAQRYLFPSLLQLFTDGLLPQDFRIRALALSPHNTTQFRDILRT RLEQALPIANTAHIQALLQRVDYLSVDLNDPTSIAEAVRDLTEHPCISYLAIPPGLYTNTALGLAQGGALQTPHRLMLEK PIGRDSINAREILNTIGTLIDEDRIFRVDHYLGKAAVQNLVALRFGNTLLEAVWNRNHIESVHILIAETEGVDGRNAYYA RAGALRDMMQSHILQLLCLVAMEPPVSMEADRIRDEKVKVLRALRPLNAQNAAMHSVRGRYSAGTINSQPVPAYQPPEGS NVETFVGVTAYIDNWRWAGVPFHLCTGKRLAERSTQIVVTLKPVTHWLFERPNRNNAAPNRLCFKLQPQENIELNLMSSL AGPEWGTLELQPLELELSVPTGKHRHIAYERLFLDAFNGNPALFVRHDEVTEAWAWIDSISNAWELSDLPLQPYPAGGWG PPQAHQFLPPLGIDGHGNNA
Sequences:
>Translated_500_residues MLLTQTKTPPHQQTLTSKSETRSMHNTLLLFGATGDLAQRYLFPSLLQLFTDGLLPQDFRIRALALSPHNTTQFRDILRT RLEQALPIANTAHIQALLQRVDYLSVDLNDPTSIAEAVRDLTEHPCISYLAIPPGLYTNTALGLAQGGALQTPHRLMLEK PIGRDSINAREILNTIGTLIDEDRIFRVDHYLGKAAVQNLVALRFGNTLLEAVWNRNHIESVHILIAETEGVDGRNAYYA RAGALRDMMQSHILQLLCLVAMEPPVSMEADRIRDEKVKVLRALRPLNAQNAAMHSVRGRYSAGTINSQPVPAYQPPEGS NVETFVGVTAYIDNWRWAGVPFHLCTGKRLAERSTQIVVTLKPVTHWLFERPNRNNAAPNRLCFKLQPQENIELNLMSSL AGPEWGTLELQPLELELSVPTGKHRHIAYERLFLDAFNGNPALFVRHDEVTEAWAWIDSISNAWELSDLPLQPYPAGGWG PPQAHQFLPPLGIDGHGNNA >Mature_500_residues MLLTQTKTPPHQQTLTSKSETRSMHNTLLLFGATGDLAQRYLFPSLLQLFTDGLLPQDFRIRALALSPHNTTQFRDILRT RLEQALPIANTAHIQALLQRVDYLSVDLNDPTSIAEAVRDLTEHPCISYLAIPPGLYTNTALGLAQGGALQTPHRLMLEK PIGRDSINAREILNTIGTLIDEDRIFRVDHYLGKAAVQNLVALRFGNTLLEAVWNRNHIESVHILIAETEGVDGRNAYYA RAGALRDMMQSHILQLLCLVAMEPPVSMEADRIRDEKVKVLRALRPLNAQNAAMHSVRGRYSAGTINSQPVPAYQPPEGS NVETFVGVTAYIDNWRWAGVPFHLCTGKRLAERSTQIVVTLKPVTHWLFERPNRNNAAPNRLCFKLQPQENIELNLMSSL AGPEWGTLELQPLELELSVPTGKHRHIAYERLFLDAFNGNPALFVRHDEVTEAWAWIDSISNAWELSDLPLQPYPAGGWG PPQAHQFLPPLGIDGHGNNA
Specific function: Pentose phosphate pathway; first step. [C]
COG id: COG0364
COG function: function code G; Glucose-6-phosphate 1-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucose-6-phosphate dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI108773793, Length=492, Percent_Identity=32.9268292682927, Blast_Score=265, Evalue=7e-71, Organism=Homo sapiens, GI109389365, Length=492, Percent_Identity=32.9268292682927, Blast_Score=265, Evalue=1e-70, Organism=Homo sapiens, GI52145310, Length=474, Percent_Identity=29.1139240506329, Blast_Score=170, Evalue=3e-42, Organism=Escherichia coli, GI1788158, Length=464, Percent_Identity=40.0862068965517, Blast_Score=353, Evalue=1e-98, Organism=Caenorhabditis elegans, GI17538218, Length=503, Percent_Identity=32.4055666003976, Blast_Score=247, Evalue=1e-65, Organism=Saccharomyces cerevisiae, GI6324088, Length=503, Percent_Identity=32.0079522862823, Blast_Score=236, Evalue=5e-63, Organism=Drosophila melanogaster, GI24643352, Length=480, Percent_Identity=33.9583333333333, Blast_Score=251, Evalue=8e-67, Organism=Drosophila melanogaster, GI24643350, Length=480, Percent_Identity=33.9583333333333, Blast_Score=251, Evalue=8e-67, Organism=Drosophila melanogaster, GI221513548, Length=478, Percent_Identity=28.0334728033473, Blast_Score=167, Evalue=2e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001282 - InterPro: IPR019796 - InterPro: IPR022675 - InterPro: IPR022674 - InterPro: IPR016040 [H]
Pfam domain/function: PF02781 G6PD_C; PF00479 G6PD_N [H]
EC number: =1.1.1.49 [H]
Molecular weight: Translated: 55865; Mature: 55865
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLTQTKTPPHQQTLTSKSETRSMHNTLLLFGATGDLAQRYLFPSLLQLFTDGLLPQDFR CCCCCCCCCCHHHHHCCHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCE IRALALSPHNTTQFRDILRTRLEQALPIANTAHIQALLQRVDYLSVDLNDPTSIAEAVRD EEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHH LTEHPCISYLAIPPGLYTNTALGLAQGGALQTPHRLMLEKPIGRDSINAREILNTIGTLI HHHCCCEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH DEDRIFRVDHYLGKAAVQNLVALRFGNTLLEAVWNRNHIESVHILIAETEGVDGRNAYYA CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHH RAGALRDMMQSHILQLLCLVAMEPPVSMEADRIRDEKVKVLRALRPLNAQNAAMHSVRGR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC YSAGTINSQPVPAYQPPEGSNVETFVGVTAYIDNWRWAGVPFHLCTGKRLAERSTQIVVT CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEECCCCHHHCCCCEEEEE LKPVTHWLFERPNRNNAAPNRLCFKLQPQENIELNLMSSLAGPEWGTLELQPLELELSVP EEHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEHHHHCCCCCCEEEEEEEEEEEECC TGKHRHIAYERLFLDAFNGNPALFVRHDEVTEAWAWIDSISNAWELSDLPLQPYPAGGWG CCCCHHHEEEEHEEEEECCCCEEEEEECHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCC PPQAHQFLPPLGIDGHGNNA CCCHHHCCCCCCCCCCCCCC >Mature Secondary Structure MLLTQTKTPPHQQTLTSKSETRSMHNTLLLFGATGDLAQRYLFPSLLQLFTDGLLPQDFR CCCCCCCCCCHHHHHCCHHHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCE IRALALSPHNTTQFRDILRTRLEQALPIANTAHIQALLQRVDYLSVDLNDPTSIAEAVRD EEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCHHHHHHHHHH LTEHPCISYLAIPPGLYTNTALGLAQGGALQTPHRLMLEKPIGRDSINAREILNTIGTLI HHHCCCEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH DEDRIFRVDHYLGKAAVQNLVALRFGNTLLEAVWNRNHIESVHILIAETEGVDGRNAYYA CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHH RAGALRDMMQSHILQLLCLVAMEPPVSMEADRIRDEKVKVLRALRPLNAQNAAMHSVRGR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC YSAGTINSQPVPAYQPPEGSNVETFVGVTAYIDNWRWAGVPFHLCTGKRLAERSTQIVVT CCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEECCCCEEECCCCHHHCCCCEEEEE LKPVTHWLFERPNRNNAAPNRLCFKLQPQENIELNLMSSLAGPEWGTLELQPLELELSVP EEHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEHHHHCCCCCCEEEEEEEEEEEECC TGKHRHIAYERLFLDAFNGNPALFVRHDEVTEAWAWIDSISNAWELSDLPLQPYPAGGWG CCCCHHHEEEEHEEEEECCCCEEEEEECHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCC PPQAHQFLPPLGIDGHGNNA CCCHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2254282 [H]