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The map label for this gene is ytfH [H]

Identifier: 28198127

GI number: 28198127

Start: 251341

End: 251769

Strand: Reverse

Name: ytfH [H]

Synonym: PD0199

Alternate gene names: 28198127

Gene position: 251769-251341 (Counterclockwise)

Preceding gene: 28198129

Following gene: 28198100

Centisome position: 9.99

GC content: 51.75

Gene sequence:

>429_bases
ATGTTTGCTTCTATCGCTTCCTCAGCCCCTCCACCTGGATGGGAAAATCTCCCGTTCGACGCGACAAAATGCCCAGTGCG
CGATGTACTGGATCATATAGGCGATAAGTGGTCGCTCCTGATTTTATTAACTCTAGTGCCCGGACCAACACGTTTCAGCG
CTATCCAGCGTGCCGTACCTGACATCTCCAAACGGATGCTCACGCAAACTCTACGGCATCTTGAGCGTAATGGAATGATT
GGTCGCACAGTCTATCCAACCAAACCACCAAGAGTAGAGTATGCGCTCGCACCTCTAGGCGAAAGTCTGTTGGTACCTGT
GATGCATTTACTTAAATGGGCAAGCACACACCATGACGAAGTGCGCAGTGCACGCGACCGTTTCGATCACGCGCAACAAG
GTGGCCTGGCAATAGCCAGCCGGATTTAA

Upstream 100 bases:

>100_bases
AGGATATTTCAAAATATCACGTTTATTGTCGAGACTATGATTTTTTCGCAAGAAGAAATTTTTACAGTCAAGGTAATTTT
TTTAGGCCCCCATCATGAAT

Downstream 100 bases:

>100_bases
AGCATCACCTGCGCTCTATCCAAAAGAGGTTATCAATCGGTGTTGTAAGCAGATGATGGCAACGAGTAATGCGCTGCCAT
ACATGCATAAACCTTATATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MFASIASSAPPPGWENLPFDATKCPVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVPDISKRMLTQTLRHLERNGMI
GRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDEVRSARDRFDHAQQGGLAIASRI

Sequences:

>Translated_142_residues
MFASIASSAPPPGWENLPFDATKCPVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVPDISKRMLTQTLRHLERNGMI
GRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDEVRSARDRFDHAQQGGLAIASRI
>Mature_142_residues
MFASIASSAPPPGWENLPFDATKCPVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVPDISKRMLTQTLRHLERNGMI
GRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDEVRSARDRFDHAQQGGLAIASRI

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=106, Percent_Identity=42.4528301886792, Blast_Score=97, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15809; Mature: 15809

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFASIASSAPPPGWENLPFDATKCPVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVP
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
DISKRMLTQTLRHLERNGMIGRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHHCCHHH
VRSARDRFDHAQQGGLAIASRI
HHHHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MFASIASSAPPPGWENLPFDATKCPVRDVLDHIGDKWSLLILLTLVPGPTRFSAIQRAVP
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
DISKRMLTQTLRHLERNGMIGRTVYPTKPPRVEYALAPLGESLLVPVMHLLKWASTHHDE
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHHCCHHH
VRSARDRFDHAQQGGLAIASRI
HHHHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]