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The map label for this gene is radC [C]

Identifier: 28198053

GI number: 28198053

Start: 149595

End: 150269

Strand: Reverse

Name: radC [C]

Synonym: PD0117

Alternate gene names: 28198053

Gene position: 150269-149595 (Counterclockwise)

Preceding gene: 28198057

Following gene: 28198052

Centisome position: 5.96

GC content: 56.89

Gene sequence:

>675_bases
ATGCACATCAACAACTGGCCTACGCATGAACGACCACGTGAAAAACTGCTGGCCCACGGTGCCGCCACACTTTCGGATGC
AGAACTGCTCGCAATCTTCCTAGGCTCCGGCCTACGCGGTCATGACGCCGTGCAAACTGCACGTAACCTGCTGCACACTC
ATGGTCCACTACGAGAACTGCTGGACCGACCTCCAGGTGATCTCATGCGCCTGCCCGGGTTAGGTCTGGCACGCGCATGC
AAACTCACCGCAGCACTGGAATTAAGCACCCGCCACCTGGCAGCCGCCCTGCAACGCGGCGCAAGTATCCACGATCCAAT
CAGCGCCGGACGCTATTTCGCACAGCGCCTACGAGCGAATCCAAATGAAGTCTTCGCCGTCCTATTTTTAGACAATAGGC
ACCGCGCGATCAGCTTTGAAGAATTGTTCCACGGCACCATCAACGGTGCCGAAGTACATCCACGCGAAGTCGTACGACGC
GCATTAACTCTGAACGCAGCGGCAGTGATCGTCGGCCATAATCACCCATCCGGTAATCGCGAACCATCACCAGCCGACCA
AATGATCACCCAACGCTTGAAAAACGCCTTAGACCTCATCGACGTGCGCCTAGTCGACCACTTCGTGATTGGTGACGGTG
CGCCGGTCTCATTCGCCGAACATGGCTGGCTATAA

Upstream 100 bases:

>100_bases
CACCTCAGTTGATTCCTACAGTTAATTAGGACGACTAGATTAGCCGATGATCCATTCCAGTCTGATATCAGAGAAGCATG
AGACTAGGCATCCTACACAG

Downstream 100 bases:

>100_bases
ACCTGGAAGACACCTATTCAGCGTATGGGAGGGCTGCCAAGCAGCCTACAAACTGAATGCTAACGCGCTCCTCATACAAA
CGGTCAGATAAAATTACGCT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL

Sequences:

>Translated_224_residues
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL
>Mature_224_residues
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=41.3145539906103, Blast_Score=186, Evalue=9e-49,
Organism=Escherichia coli, GI1788997, Length=153, Percent_Identity=44.4444444444444, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI2367100, Length=102, Percent_Identity=58.8235294117647, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI1788312, Length=102, Percent_Identity=56.8627450980392, Blast_Score=120, Evalue=9e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y117_XYLFT (Q87F21)

Other databases:

- EMBL:   AE009442
- RefSeq:   NP_778367.1
- ProteinModelPortal:   Q87F21
- SMR:   Q87F21
- STRING:   Q87F21
- GeneID:   1144329
- GenomeReviews:   AE009442_GR
- KEGG:   xft:PD0117
- eggNOG:   COG2003
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   XFAS183190:PD_0117-MONOMER
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 24590; Mature: 24590

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLREL
CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHH
LDRPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRAN
HHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
PNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRRALTLNAAAVIVGHNHPSGNR
CCCEEEEEEECCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCC
EPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
>Mature Secondary Structure
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLREL
CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHH
LDRPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRAN
HHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
PNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRRALTLNAAAVIVGHNHPSGNR
CCCEEEEEEECCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCC
EPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12533478