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The map label for this gene is 27366448

Identifier: 27366448

GI number: 27366448

Start: 3263419

End: 3264795

Strand: Reverse

Name: 27366448

Synonym: VV1_3188

Alternate gene names: NA

Gene position: 3264795-3263419 (Counterclockwise)

Preceding gene: 27366449

Following gene: 27366447

Centisome position: 99.48

GC content: 40.89

Gene sequence:

>1377_bases
ATGTTAAGAAAATGGCAAGCAGAATGTGTTGCTCAGGCGTTGGAAAAGTACGAATCCGGTTCTAACCATTTCTTCTGTCA
GGCAACACCTGGAGCCGGTAAAAGCATCATGTCAGCTACACTGGCTAAGACACTACTCGATAAAGGCATGATCGATCTTA
TTCTTTGCTTTTCACCTTCAGTCGCTGTAGCTGATGGCATGAGGGCTACGTTCTCGATAACCATAAATTGTCCATTTAAC
GGAAGTCTAGGCTCAATTGGTCAGTCGCTTACTTATCAGTCAATTCAGTATTTAGGCGACGACTTTTGGCGGACCATTGA
AAAATATCGGCTGCTTGTCGTATTTGATGAAATACATCACTGTTCTGGCGATGGGCCAGACAGAGCCAACATTTGGGGAC
AACAGATATTAGCGCGTATACAAGGTGTTGCCACCTATACTTTGGCTCTTTCAGGAACTCCTTGGCGCTCAGATAAATTT
CCGATTGTTTTAGCTGAATATAGTGATCCGGAAGGCAAGCTTTTTTGTGATTACCAGTATGGGTTAGCTGAAGCTATAGC
TGACAAAGTTTGCCGTAAGCCGAAATTAGTTTTGGTTGATAATGAACATTTAACGATTTCAGAAGGTTCGGAGAAAAAGT
CATTTGCTTCTATTCTTGAACTCCTTAAGCAATCAAAGACGTCTTATCAGGATGTGATTCATAATACTCAAGCAATGGAG
TATATCCTCGGCTTGGGATGTCAGAAACTTAGTGAAATCCGGAAAGAGTCTTTTAATGCCGGTGGTCTCGTTGTTTCGTC
ATCGGTGAAGCATGCAAAACAAGTACAAAAAATATTGACCGAAAAATTTGGCCAGTCAGCAACATTAGTAACCTACCATC
ATGATGATCCACAATCTGAAATTAAGGCCTATCAAACAGGAACGACCCAATGGATTGTGAGTGTCGGTATGATAAGCGAA
GGTACCGATATTCCCCGATTACAAGTGTGTTGTCATATCAGCTCTGTAAAAACAGAACTTTACTTTAGACAAGTACTTGG
TCGGATATTACGAGTCAACGAAAGTCCAAATCAACAAGCCTGGCTTTATACGTTTGCCGAGCAGAATTTAATTGAATACG
CGGAACGTATAGAGCATGACATTCCTGAAACATGTCTCTTTGCCAAAATCGTTAAAGATGAGTATGTCACACAGCTAAAA
GCAACAAATCAAAGCGGTGAAGTTGAATCTGAACCAATAAAAACTATCAATATTTACAGCCAGTTAGAATGGGGAACTTA
TTCTACACAGTCCAATTCAGGCCGGGGCTCTGATGACATTTATGATGAAATCTGGTTAGGACAATTTCGTGAGCGTGTAG
TCTCAGCATTTTTATAA

Upstream 100 bases:

>100_bases
CGTCTGCACGTTGCCGCTAACGAAAAGGCAGCTTTGTTTATGGGTAACATTAATGCAATTACGAATATGTTGAATTCATT
GTCACATGAGAGAACATAGT

Downstream 100 bases:

>100_bases
TCAGAGAAGATGTTTCATCAAGCAAGAGATTTTTAAGGAGTTTATATGTTCTATATCGGTGTTAGTTATTATTACGCGAC
GGGTGAAGGTGTCACAATTT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 458; Mature: 458

Protein sequence:

>458_residues
MLRKWQAECVAQALEKYESGSNHFFCQATPGAGKSIMSATLAKTLLDKGMIDLILCFSPSVAVADGMRATFSITINCPFN
GSLGSIGQSLTYQSIQYLGDDFWRTIEKYRLLVVFDEIHHCSGDGPDRANIWGQQILARIQGVATYTLALSGTPWRSDKF
PIVLAEYSDPEGKLFCDYQYGLAEAIADKVCRKPKLVLVDNEHLTISEGSEKKSFASILELLKQSKTSYQDVIHNTQAME
YILGLGCQKLSEIRKESFNAGGLVVSSSVKHAKQVQKILTEKFGQSATLVTYHHDDPQSEIKAYQTGTTQWIVSVGMISE
GTDIPRLQVCCHISSVKTELYFRQVLGRILRVNESPNQQAWLYTFAEQNLIEYAERIEHDIPETCLFAKIVKDEYVTQLK
ATNQSGEVESEPIKTINIYSQLEWGTYSTQSNSGRGSDDIYDEIWLGQFRERVVSAFL

Sequences:

>Translated_458_residues
MLRKWQAECVAQALEKYESGSNHFFCQATPGAGKSIMSATLAKTLLDKGMIDLILCFSPSVAVADGMRATFSITINCPFN
GSLGSIGQSLTYQSIQYLGDDFWRTIEKYRLLVVFDEIHHCSGDGPDRANIWGQQILARIQGVATYTLALSGTPWRSDKF
PIVLAEYSDPEGKLFCDYQYGLAEAIADKVCRKPKLVLVDNEHLTISEGSEKKSFASILELLKQSKTSYQDVIHNTQAME
YILGLGCQKLSEIRKESFNAGGLVVSSSVKHAKQVQKILTEKFGQSATLVTYHHDDPQSEIKAYQTGTTQWIVSVGMISE
GTDIPRLQVCCHISSVKTELYFRQVLGRILRVNESPNQQAWLYTFAEQNLIEYAERIEHDIPETCLFAKIVKDEYVTQLK
ATNQSGEVESEPIKTINIYSQLEWGTYSTQSNSGRGSDDIYDEIWLGQFRERVVSAFL
>Mature_458_residues
MLRKWQAECVAQALEKYESGSNHFFCQATPGAGKSIMSATLAKTLLDKGMIDLILCFSPSVAVADGMRATFSITINCPFN
GSLGSIGQSLTYQSIQYLGDDFWRTIEKYRLLVVFDEIHHCSGDGPDRANIWGQQILARIQGVATYTLALSGTPWRSDKF
PIVLAEYSDPEGKLFCDYQYGLAEAIADKVCRKPKLVLVDNEHLTISEGSEKKSFASILELLKQSKTSYQDVIHNTQAME
YILGLGCQKLSEIRKESFNAGGLVVSSSVKHAKQVQKILTEKFGQSATLVTYHHDDPQSEIKAYQTGTTQWIVSVGMISE
GTDIPRLQVCCHISSVKTELYFRQVLGRILRVNESPNQQAWLYTFAEQNLIEYAERIEHDIPETCLFAKIVKDEYVTQLK
ATNQSGEVESEPIKTINIYSQLEWGTYSTQSNSGRGSDDIYDEIWLGQFRERVVSAFL

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.leprae ML1624 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014001
- InterPro:   IPR014021
- InterPro:   IPR006935 [H]

Pfam domain/function: PF04851 ResIII [H]

EC number: NA

Molecular weight: Translated: 51352; Mature: 51352

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKWQAECVAQALEKYESGSNHFFCQATPGAGKSIMSATLAKTLLDKGMIDLILCFSPS
CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHEEHEECCCC
VAVADGMRATFSITINCPFNGSLGSIGQSLTYQSIQYLGDDFWRTIEKYRLLVVFDEIHH
CHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHC
CSGDGPDRANIWGQQILARIQGVATYTLALSGTPWRSDKFPIVLAEYSDPEGKLFCDYQY
CCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEHH
GLAEAIADKVCRKPKLVLVDNEHLTISEGSEKKSFASILELLKQSKTSYQDVIHNTQAME
HHHHHHHHHHHCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
YILGLGCQKLSEIRKESFNAGGLVVSSSVKHAKQVQKILTEKFGQSATLVTYHHDDPQSE
HHHHCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
IKAYQTGTTQWIVSVGMISEGTDIPRLQVCCHISSVKTELYFRQVLGRILRVNESPNQQA
HHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
WLYTFAEQNLIEYAERIEHDIPETCLFAKIVKDEYVTQLKATNQSGEVESEPIKTINIYS
EEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
QLEWGTYSTQSNSGRGSDDIYDEIWLGQFRERVVSAFL
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLRKWQAECVAQALEKYESGSNHFFCQATPGAGKSIMSATLAKTLLDKGMIDLILCFSPS
CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHEEHEECCCC
VAVADGMRATFSITINCPFNGSLGSIGQSLTYQSIQYLGDDFWRTIEKYRLLVVFDEIHH
CHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHC
CSGDGPDRANIWGQQILARIQGVATYTLALSGTPWRSDKFPIVLAEYSDPEGKLFCDYQY
CCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCEEEEEHH
GLAEAIADKVCRKPKLVLVDNEHLTISEGSEKKSFASILELLKQSKTSYQDVIHNTQAME
HHHHHHHHHHHCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
YILGLGCQKLSEIRKESFNAGGLVVSSSVKHAKQVQKILTEKFGQSATLVTYHHDDPQSE
HHHHCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
IKAYQTGTTQWIVSVGMISEGTDIPRLQVCCHISSVKTELYFRQVLGRILRVNESPNQQA
HHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
WLYTFAEQNLIEYAERIEHDIPETCLFAKIVKDEYVTQLKATNQSGEVESEPIKTINIYS
EEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEE
QLEWGTYSTQSNSGRGSDDIYDEIWLGQFRERVVSAFL
EECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]