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The map label for this gene is ydhC [H]

Identifier: 27366023

GI number: 27366023

Start: 2794961

End: 2795656

Strand: Reverse

Name: ydhC [H]

Synonym: VV1_2733

Alternate gene names: 27366023

Gene position: 2795656-2794961 (Counterclockwise)

Preceding gene: 326424062

Following gene: 27366022

Centisome position: 85.18

GC content: 49.71

Gene sequence:

>696_bases
ATGAATGTAGACACCAAAGCCATTGGCAAACTTGCGGGCAGCGACAAGGAAAACACCAAATCCGAATCGCTGACCGAATC
CTTGGTTGAAGCGATTGTGAATGGACAAATCGCACCGGGAAGCAAAATCTCGGAACCCGAGTTAGCCAAGCATTATCACG
TGAGCCGAGGCCCACTGCGTGAGGCGATGATGCGACTAGAAGGGCTTGGCTTGATCGAACGTGTTCCTCATGTTGGGGCG
CGTGTGATAACTCTTTCACCTGAAAAATTGGTGGAGCTGTATGCGGTGCGTGAAGCACTAGAAGGCATGGCCGCGAGGCT
TGCCGCTCGCTACATCAGCCAAGAAGAGCTGTTGAGCCTTGAACTGCTATTGTCGACACATTCGAAACACATTGATGAAG
TAGAAGGTTCCTCTTACTTCCATCAACACGGTGATTTCGACTTTCACTACCGCATCATCAAAGCCAGTCGCAACCGCGAA
TTGATCGCGCTGCTGTGTGACGAGCTGTACCACTTACTGCGCATGTATCGCTATCAATCACCGCGTGCCCAATCACGACC
CAAAGAAGCGTTGGAAGAGCACAAATTCATTCTGCAAGCGATTCGCAATCGAGATGAAGAGTTGTCGGAAATGTTGATGA
GAAGACACATCTCCGGCAGCCGAAAATTAATCGAACAACAGATCCTAAAGGATTAG

Upstream 100 bases:

>100_bases
AATTGTCGACAATTTACTTGATTGTCGACAATTTGATCGACTATTTTATATTCAGAGACAGACATTGTTGACAGATTGCA
GTCAGGAAACGTATTTGAAT

Downstream 100 bases:

>100_bases
AGGAAACGTGTTATGAGCTTAACTCCGGGGGCGAAGTTCAGACTCGCCGTACAACAAAACGATCCGCTGCAAATCGTCGG
CACCATCAACCCTTATTGCG

Product: propionate catabolism operon transcriptional regulator of GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MNVDTKAIGKLAGSDKENTKSESLTESLVEAIVNGQIAPGSKISEPELAKHYHVSRGPLREAMMRLEGLGLIERVPHVGA
RVITLSPEKLVELYAVREALEGMAARLAARYISQEELLSLELLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKASRNRE
LIALLCDELYHLLRMYRYQSPRAQSRPKEALEEHKFILQAIRNRDEELSEMLMRRHISGSRKLIEQQILKD

Sequences:

>Translated_231_residues
MNVDTKAIGKLAGSDKENTKSESLTESLVEAIVNGQIAPGSKISEPELAKHYHVSRGPLREAMMRLEGLGLIERVPHVGA
RVITLSPEKLVELYAVREALEGMAARLAARYISQEELLSLELLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKASRNRE
LIALLCDELYHLLRMYRYQSPRAQSRPKEALEEHKFILQAIRNRDEELSEMLMRRHISGSRKLIEQQILKD
>Mature_231_residues
MNVDTKAIGKLAGSDKENTKSESLTESLVEAIVNGQIAPGSKISEPELAKHYHVSRGPLREAMMRLEGLGLIERVPHVGA
RVITLSPEKLVELYAVREALEGMAARLAARYISQEELLSLELLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKASRNRE
LIALLCDELYHLLRMYRYQSPRAQSRPKEALEEHKFILQAIRNRDEELSEMLMRRHISGSRKLIEQQILKD

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=29.6482412060301, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26436; Mature: 26436

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVDTKAIGKLAGSDKENTKSESLTESLVEAIVNGQIAPGSKISEPELAKHYHVSRGPLR
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHH
EAMMRLEGLGLIERVPHVGARVITLSPEKLVELYAVREALEGMAARLAARYISQEELLSL
HHHHHHHCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
ELLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKASRNRELIALLCDELYHLLRMYRYQS
HHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PRAQSRPKEALEEHKFILQAIRNRDEELSEMLMRRHISGSRKLIEQQILKD
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNVDTKAIGKLAGSDKENTKSESLTESLVEAIVNGQIAPGSKISEPELAKHYHVSRGPLR
CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHH
EAMMRLEGLGLIERVPHVGARVITLSPEKLVELYAVREALEGMAARLAARYISQEELLSL
HHHHHHHCCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
ELLLSTHSKHIDEVEGSSYFHQHGDFDFHYRIIKASRNRELIALLCDELYHLLRMYRYQS
HHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
PRAQSRPKEALEEHKFILQAIRNRDEELSEMLMRRHISGSRKLIEQQILKD
CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]