Click here to switch to the map view.

The map label for this gene is yidZ [H]

Identifier: 27365607

GI number: 27365607

Start: 2305733

End: 2306650

Strand: Reverse

Name: yidZ [H]

Synonym: VV1_2284

Alternate gene names: 27365607

Gene position: 2306650-2305733 (Counterclockwise)

Preceding gene: 27365608

Following gene: 27365602

Centisome position: 70.28

GC content: 47.93

Gene sequence:

>918_bases
ATGGATTACATTTCTCTTTCTCGAATTAGCCTTAAGCATTTAACCGTTTTGCACGTTTTGTTAACCACTCACAGCGTGAC
AAGCGCGGCGGAGCAACTTTGCGTCACCCCCTCTTGTGTAAGCAAGATTTTGTCTCAGTTACGCAGTGTGCTAAACGATG
AACTCTTTTATCGCGATGGAACCCAACTGATCCCCACCTCTTATGCACTGAGCATCGGTCCTGCCATTCACGGCATTCTT
TCCAGTATGAACGGGGTGATTCACCAAGGCACATTTGACGCAAACTCATACACTGGGACCTTCTCACTCTCCATGCGTGA
AAGTACCTTTGAAGTGTTTGCTGACACGTTCAGCCAGATCCTCCAACAAACCCCCAAAGCGCATCTTCATATATACGCTA
AGGAGCAGCATGGCTTTGAGGCTTTGCTACGCGGCCAGGTTGATTTTATTCTGTTGCCCCACGACATTAGCCAGCCTCCA
ACCATGAACCGTGAGTTGATTTGGCATACAATCAAACGCGACGAGATGATCTGCTTAATGAATAAGGCACATCCGGCGCA
GCAAACCGACTTTACCATCGAGGATTACCTGTCATTCCAACACATTGGCATTCACGACAAAGAGTTGGCGACACCCTACT
TCGAGCAAACCTTGATTCAGAGCCATAAAGCACGTGAGATCGCCCTTTCGGTCGCAGATTTTGGCGCGGCGGCAGTGATG
TGCCATCGTACCCCATTGCTTTTTACTTGCTCAAAACTGTGGGCAGAGACGGCTTTACAAGCCAAAGGGCTTATTCAGAA
GAGCTTGCCGTTTGACTATGGCCAAGTGGCGTATAGCTTGGTGTATAACAAACAGAGTTTGAATGATCCGGCGCTGACTT
GGTTAAAAAGCCAGCTTCATCAACTCAATGAGAAGTAG

Upstream 100 bases:

>100_bases
CACGGTTTTTCTTTTTGTTGGCAACATCTCCCACCAACAACGCTTGTTTCCCCATGAAAATGTGGTGTAATCCATGAAAC
GCTGAGTTGAAACACATTTT

Downstream 100 bases:

>100_bases
CCGTTTCAACGACTAAGCAATGTCTCGATAGAGCGGCGTTTTCGGTAAGGCGATCCGATGTCGGATTTTGCGTTTCAACG
CCTGATAGAAGCCGTTCATC

Product: LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDGTQLIPTSYALSIGPAIHGIL
SSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQILQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPP
TMNRELIWHTIKRDEMICLMNKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLHQLNEK

Sequences:

>Translated_305_residues
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDGTQLIPTSYALSIGPAIHGIL
SSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQILQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPP
TMNRELIWHTIKRDEMICLMNKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLHQLNEK
>Mature_305_residues
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDGTQLIPTSYALSIGPAIHGIL
SSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQILQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPP
TMNRELIWHTIKRDEMICLMNKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLHQLNEK

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=299, Percent_Identity=24.7491638795987, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081684, Length=299, Percent_Identity=21.7391304347826, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34360; Mature: 34360

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHEECCC
TQLIPTSYALSIGPAIHGILSSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQI
CEECCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
LQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPPTMNRELIWHTIKRDEMICLM
HHHCCCCEEEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEE
NKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CCCCCCCCCCCCHHHHHCHHHCCCCCHHHCCHHHHHHHHHHHCHHHHEEEHHHCCHHHHH
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLH
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
QLNEK
HHCCC
>Mature Secondary Structure
MDYISLSRISLKHLTVLHVLLTTHSVTSAAEQLCVTPSCVSKILSQLRSVLNDELFYRDG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHEECCC
TQLIPTSYALSIGPAIHGILSSMNGVIHQGTFDANSYTGTFSLSMRESTFEVFADTFSQI
CEECCCHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHH
LQQTPKAHLHIYAKEQHGFEALLRGQVDFILLPHDISQPPTMNRELIWHTIKRDEMICLM
HHHCCCCEEEEEEECCCCHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEE
NKAHPAQQTDFTIEDYLSFQHIGIHDKELATPYFEQTLIQSHKAREIALSVADFGAAAVM
CCCCCCCCCCCCHHHHHCHHHCCCCCHHHCCHHHHHHHHHHHCHHHHEEEHHHCCHHHHH
CHRTPLLFTCSKLWAETALQAKGLIQKSLPFDYGQVAYSLVYNKQSLNDPALTWLKSQLH
HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHH
QLNEK
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA