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The map label for this gene is rpoE [C]

Identifier: 27365319

GI number: 27365319

Start: 1963828

End: 1964403

Strand: Reverse

Name: rpoE [C]

Synonym: VV1_1974

Alternate gene names: 27365319

Gene position: 1964403-1963828 (Counterclockwise)

Preceding gene: 27365322

Following gene: 27365318

Centisome position: 59.86

GC content: 42.88

Gene sequence:

>576_bases
ATGGAGGCTTCTGTGGCAATATTTGAATTATTCCGAAAGAAAACGTCTGACACTCCGGTCAATACGGAAATGGACAGACA
AAGAAAATACGAAGCACTTGTACGAGCCTATCATCGAGATTTGTACCGTTACGCTTACTGGCTTTGCAAAGATCAATCCA
TTGCCGAAGATCTTGTGCAAGAGACCTGCCTTAGAGCGTGGAAATCTCTAGATAGCCTACAAGATGAAAAAGCCGCAAAA
TCTTGGCTCATTACGATTTTGAGACGAGAGAATGCACGTCGTTTTGAAAGAAAACAGTTCGACCTCGTGGATATTGATGA
CTATGGCAATGATGCCAAAGTCACTGATGATGAACACCACCAGCAAGAATGGTTGCAAGCGCAAATTATGAAGTTAGATG
TGGAATATCGTGAGCCACTGTTTCTCCAAGTTGTGGGGGGATTTAGCGGTGAAGAGATCGGAGACATCCTTGATCTCAAT
AAAAATACGGTAATGACACGTCTGTTTCGCGCAAGAAATCAGTTGAAAGAGCTGTTAGACTCAGACCAAACTCAAAGGGG
GCAAAAAAATGGATGA

Upstream 100 bases:

>100_bases
TCAATATTTACGTTAGACTAAGTGTCGGGCTCGCTTGATTGATAAAACAGATAGGAATCATACGATTAAAAATGCATTCC
TATTCCCACACAGAGCAGGT

Downstream 100 bases:

>100_bases
TTTAGAATTTCGTCGCCGTATTTTGTCGGACCCGAAAAGCCGTGACGAAGAAGTTTTGCAAGCGCTCAACAGCAGCGATT
CCAATGCAAAATTTGCTGAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor RpoE; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase ECF-Type Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Factor Sigma C; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma Subunit Ecf Family; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator; RNA Polymerase Sigma Factor SigX; ECF-Family Protein Sigma Factor H; ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit RpoE; RNA Polymerase Sigma Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-24 Subunit Rpoe; RNA Polymerase Sigma Factor SigW; Sigma Factor; ECF SubfamilyRNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MEASVAIFELFRKKTSDTPVNTEMDRQRKYEALVRAYHRDLYRYAYWLCKDQSIAEDLVQETCLRAWKSLDSLQDEKAAK
SWLITILRRENARRFERKQFDLVDIDDYGNDAKVTDDEHHQQEWLQAQIMKLDVEYREPLFLQVVGGFSGEEIGDILDLN
KNTVMTRLFRARNQLKELLDSDQTQRGQKNG

Sequences:

>Translated_191_residues
MEASVAIFELFRKKTSDTPVNTEMDRQRKYEALVRAYHRDLYRYAYWLCKDQSIAEDLVQETCLRAWKSLDSLQDEKAAK
SWLITILRRENARRFERKQFDLVDIDDYGNDAKVTDDEHHQQEWLQAQIMKLDVEYREPLFLQVVGGFSGEEIGDILDLN
KNTVMTRLFRARNQLKELLDSDQTQRGQKNG
>Mature_191_residues
MEASVAIFELFRKKTSDTPVNTEMDRQRKYEALVRAYHRDLYRYAYWLCKDQSIAEDLVQETCLRAWKSLDSLQDEKAAK
SWLITILRRENARRFERKQFDLVDIDDYGNDAKVTDDEHHQQEWLQAQIMKLDVEYREPLFLQVVGGFSGEEIGDILDLN
KNTVMTRLFRARNQLKELLDSDQTQRGQKNG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22642; Mature: 22642

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEASVAIFELFRKKTSDTPVNTEMDRQRKYEALVRAYHRDLYRYAYWLCKDQSIAEDLVQ
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ETCLRAWKSLDSLQDEKAAKSWLITILRRENARRFERKQFDLVDIDDYGNDAKVTDDEHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHH
QQEWLQAQIMKLDVEYREPLFLQVVGGFSGEEIGDILDLNKNTVMTRLFRARNQLKELLD
HHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
SDQTQRGQKNG
CHHHCCCCCCC
>Mature Secondary Structure
MEASVAIFELFRKKTSDTPVNTEMDRQRKYEALVRAYHRDLYRYAYWLCKDQSIAEDLVQ
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
ETCLRAWKSLDSLQDEKAAKSWLITILRRENARRFERKQFDLVDIDDYGNDAKVTDDEHH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHH
QQEWLQAQIMKLDVEYREPLFLQVVGGFSGEEIGDILDLNKNTVMTRLFRARNQLKELLD
HHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
SDQTQRGQKNG
CHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA