| Definition | Vibrio vulnificus CMCP6 chromosome chromosome I, complete sequence. |
|---|---|
| Accession | NC_004459 |
| Length | 3,281,866 |
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The map label for this gene is glnD
Identifier: 27365205
GI number: 27365205
Start: 1850097
End: 1852718
Strand: Reverse
Name: glnD
Synonym: VV1_1857
Alternate gene names: 27365205
Gene position: 1852718-1850097 (Counterclockwise)
Preceding gene: 27365206
Following gene: 27365204
Centisome position: 56.45
GC content: 49.28
Gene sequence:
>2622_bases ATGGCTTTTCAATCTCCCCTCACCTTCAATGACGAACAACTGACGGTTGCCCAACTCAAATCACAGCTCGATCTTTTTGC CAATGCGCAGAAACAAGCGTTTCTTAACCATCATCCGGTGACAGACTTAGTGCTCTCACGCGCGGAATATATGGATCTGC TATTGACCCGTCTTTGGCGCTACTACGGGTTTAGCGAAATTCATAATATTTCCTTAGTCGCGGTGGGAGGATATGGTCGA GGTGAGCTTCACCCGCTATCCGACATCGATATACTGGTGCTCTCTAAACACAAATTACCCGGTGAGTTAGAGACCAAGCT GAGCGAGTTCATCACTTTGCTTTGGGATTTGCGCTTAGAAGTGGGTCATGCTGTCCGCACGGTCGAGGAGTGCGCAGCAA TAGGCCGTGAAGATTTGACCGTCGCCACTAACCTGCAGGAAGCTCGATTGCTGTGCGGCAGTGAAAACACCTTCCAAGAT TTGAAAAAAGTGGTGCTCTCTGACTCCTTCTGGCCCAGTGAGACCTTCTACCGTGCCAAGATTCAAGAACAGCGTGAGCG CCATGCGCGTTATCACGATACCACTTACAATTTGGAGCCCGACATAAAATCGACACCGGGTGGATTGCGCGACATTCATA CCTTAAGTTGGGTAGCGCGTCGTCATTTTGGTGCCACTTCGCTGCTTGAGATGAGCCGCTATGGTTTTCTGACCGATGCC GAGTATCGCGAACTGGTGGAATGCCAAGATTTTCTATGGCGAGTGCGTTTTGCGCTACACATCGAGCTAAAACGTTATGA CAATCGATTGACCTTCGCCCATCAAATACAAGTCGCTGAACATTTAGGCTTTAAAGGTGAAGGGAACCGCGGCATTGAAA TGATGATGAAGGAGTTCTACCGCACACTTCGCCGTGTAGCGGAGCTCAATAAGATGCTGCTCAAGCTGTTTGACCAAGCC ATCATTAACGGTGGAGAAACCGAGCCAGCGGTCATCATCAATGAAGATTTTCAACGCCGAGGGCGTTTAATCGAGGCGCG CAAACCTGCGTTGTTTCAAGCACGTCCAGAAACCATCCTTGATATGTTTTTGCACATCGCCAACGATTCCACCATTGACA GTGTTAGCCCGCCAACGTTACGCCAATTGCGCACCGCTCGCCGCCGTTTGAACAAATTTCTTCATACCATTCCGGAAGCG CGTGAAAAATTTATGGAGCTGGTTCGCCACCCGAATGCGCTTCATCGAGCCTTTAGCTTAATGCATAAGCTTGGGGTCTT AGCCGCCTACCTTCCCCAATGGAGCCAAATTGTCGGCCAGATGCAGTTTGACCTTTTCCACGTCTATACCGTGGATGAAC ACAGTGTGCGACTGCTTAATCACATTAACACCTTTAGTTATGCGAAAAATCACGACAAACACCCCATCTGCTGCGAAGTT TATCCTAGATTGCAAAAGAAAGAGTTATTGCTCCTCGCCGCCATTTTCCATGACATTGGCAAAGGGCGCGGTGGCGATCA CTCAGAAATTGGTGAAAAGGAAGCATACGATTTCTGTATCGAACACGGCCTTTCCAAGCCTGAAGCCAAGCTGGTATCTT GGCTGGTACGACACCATCTGCTGATGTCGGTCACGGCCCAGCGCCGAGACATCTATGACCCCGAGGTGATCACTGAGTTC GCCAAACAAGTACGCGATGAAGAACGTTTGGAATACTTGGTCTGCCTGACCGTTGCGGATATTTGTGCAACCAACCCAGA GCTTTGGAACAGTTGGAAACGGACCTTGCTTGCGGAGCTGTTTTACTCCACCCAAAGAGCCTTACGACGTGGATTGGAAA ATCCAGTCGACGTGCGTGAGCGCATTCGTCACAACCAGCAACTCGCATCGGCTTTGCTGCGCAAAGAAGGCTTTACCGCG CGTGAAATCGAAGTATTGTGGCAACGTTTCAAAGCGGATTATTTCCTCCGTCACACTCACAAACAGATCGCCTGGCATTG CGAACATATTCTGCGTATGGACAACCCTGAGCAGCCTTTAGTGCTGATGAGTAAAAAGGCCACTCGTGGCGGTACAGAAG TGTTTGTTTATACCAAAGACCAACATGCGCTCTTTGCCACCGTGGTGGCAGAGCTAGACCGTCGTAATTTTAACGTGCAC GACGCACAGATCATGAGCAGCAAAGACGGTTACGTACTGGATACCTTTATGGTACTTGACCAACACGGCCAAGCGATCGA CGTCGACAATCACAAAGCGGTCATCAAACATCTGATGCACGTGCTAGCTGATGGTCGTCCCACCAAAGTTAAAACCCGTC GTACGCCTTATAAGTTGCAACATTTCAAAGTGAAAACCAAAGTGGATTTCCTACCCACGAAGAGTAAAAAACGCACCTTG ATGGAACTGGTGGCGCTCGATACACCGGGGCTACTTGCGATTACAGGCGCGACCTTCGCTGATATGGGATTTAACTTACA TGGGGCAAAAATCACCACCATAGGTGAGCGAGCGGAAGACTTATTTATTCTTACTAGTGAGAATGGCGGACGACTCAGTG AAGAGCAAGAACTTCAGTTACGTGAAAAACTGATTCACAACATCGCCGAACTCGCCCCTTAA
Upstream 100 bases:
>100_bases ATCATTTCGTTTTTCTATCCCCGCCTACGCGGGGATATTTTTTATCAGTCGCAACTCTGTTACATTCTTTAGCAGATAAC GATTGCACGGATAGCAAACT
Downstream 100 bases:
>100_bases CCTCATCATAAAATTCTGCTTTTGATAAATCCCTCAGCATGCTCTGCTGAGGGATTTTTTCACCAAGGATACCGAGCGCG ATCTCGTGCACAACTTAGTC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme
Number of amino acids: Translated: 873; Mature: 872
Protein sequence:
>873_residues MAFQSPLTFNDEQLTVAQLKSQLDLFANAQKQAFLNHHPVTDLVLSRAEYMDLLLTRLWRYYGFSEIHNISLVAVGGYGR GELHPLSDIDILVLSKHKLPGELETKLSEFITLLWDLRLEVGHAVRTVEECAAIGREDLTVATNLQEARLLCGSENTFQD LKKVVLSDSFWPSETFYRAKIQEQRERHARYHDTTYNLEPDIKSTPGGLRDIHTLSWVARRHFGATSLLEMSRYGFLTDA EYRELVECQDFLWRVRFALHIELKRYDNRLTFAHQIQVAEHLGFKGEGNRGIEMMMKEFYRTLRRVAELNKMLLKLFDQA IINGGETEPAVIINEDFQRRGRLIEARKPALFQARPETILDMFLHIANDSTIDSVSPPTLRQLRTARRRLNKFLHTIPEA REKFMELVRHPNALHRAFSLMHKLGVLAAYLPQWSQIVGQMQFDLFHVYTVDEHSVRLLNHINTFSYAKNHDKHPICCEV YPRLQKKELLLLAAIFHDIGKGRGGDHSEIGEKEAYDFCIEHGLSKPEAKLVSWLVRHHLLMSVTAQRRDIYDPEVITEF AKQVRDEERLEYLVCLTVADICATNPELWNSWKRTLLAELFYSTQRALRRGLENPVDVRERIRHNQQLASALLRKEGFTA REIEVLWQRFKADYFLRHTHKQIAWHCEHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVH DAQIMSSKDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTKVDFLPTKSKKRTL MELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENGGRLSEEQELQLREKLIHNIAELAP
Sequences:
>Translated_873_residues MAFQSPLTFNDEQLTVAQLKSQLDLFANAQKQAFLNHHPVTDLVLSRAEYMDLLLTRLWRYYGFSEIHNISLVAVGGYGR GELHPLSDIDILVLSKHKLPGELETKLSEFITLLWDLRLEVGHAVRTVEECAAIGREDLTVATNLQEARLLCGSENTFQD LKKVVLSDSFWPSETFYRAKIQEQRERHARYHDTTYNLEPDIKSTPGGLRDIHTLSWVARRHFGATSLLEMSRYGFLTDA EYRELVECQDFLWRVRFALHIELKRYDNRLTFAHQIQVAEHLGFKGEGNRGIEMMMKEFYRTLRRVAELNKMLLKLFDQA IINGGETEPAVIINEDFQRRGRLIEARKPALFQARPETILDMFLHIANDSTIDSVSPPTLRQLRTARRRLNKFLHTIPEA REKFMELVRHPNALHRAFSLMHKLGVLAAYLPQWSQIVGQMQFDLFHVYTVDEHSVRLLNHINTFSYAKNHDKHPICCEV YPRLQKKELLLLAAIFHDIGKGRGGDHSEIGEKEAYDFCIEHGLSKPEAKLVSWLVRHHLLMSVTAQRRDIYDPEVITEF AKQVRDEERLEYLVCLTVADICATNPELWNSWKRTLLAELFYSTQRALRRGLENPVDVRERIRHNQQLASALLRKEGFTA REIEVLWQRFKADYFLRHTHKQIAWHCEHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVH DAQIMSSKDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTKVDFLPTKSKKRTL MELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENGGRLSEEQELQLREKLIHNIAELAP >Mature_872_residues AFQSPLTFNDEQLTVAQLKSQLDLFANAQKQAFLNHHPVTDLVLSRAEYMDLLLTRLWRYYGFSEIHNISLVAVGGYGRG ELHPLSDIDILVLSKHKLPGELETKLSEFITLLWDLRLEVGHAVRTVEECAAIGREDLTVATNLQEARLLCGSENTFQDL KKVVLSDSFWPSETFYRAKIQEQRERHARYHDTTYNLEPDIKSTPGGLRDIHTLSWVARRHFGATSLLEMSRYGFLTDAE YRELVECQDFLWRVRFALHIELKRYDNRLTFAHQIQVAEHLGFKGEGNRGIEMMMKEFYRTLRRVAELNKMLLKLFDQAI INGGETEPAVIINEDFQRRGRLIEARKPALFQARPETILDMFLHIANDSTIDSVSPPTLRQLRTARRRLNKFLHTIPEAR EKFMELVRHPNALHRAFSLMHKLGVLAAYLPQWSQIVGQMQFDLFHVYTVDEHSVRLLNHINTFSYAKNHDKHPICCEVY PRLQKKELLLLAAIFHDIGKGRGGDHSEIGEKEAYDFCIEHGLSKPEAKLVSWLVRHHLLMSVTAQRRDIYDPEVITEFA KQVRDEERLEYLVCLTVADICATNPELWNSWKRTLLAELFYSTQRALRRGLENPVDVRERIRHNQQLASALLRKEGFTAR EIEVLWQRFKADYFLRHTHKQIAWHCEHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHD AQIMSSKDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTKVDFLPTKSKKRTLM ELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENGGRLSEEQELQLREKLIHNIAELAP
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family
Homologues:
Organism=Escherichia coli, GI1786363, Length=861, Percent_Identity=53.6585365853659, Blast_Score=961, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GLND_VIBVU (Q8DBG3)
Other databases:
- EMBL: AE016795 - RefSeq: NP_760733.1 - ProteinModelPortal: Q8DBG3 - GeneID: 1178759 - GenomeReviews: AE016795_GR - KEGG: vvu:VV1_1857 - HOGENOM: HBG687872 - OMA: MQHDLFH - ProtClustDB: PRK05007 - BioCyc: VVUL216895:VV1_1857-MONOMER - BRENDA: 2.7.7.59 - HAMAP: MF_00277 - InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 - PANTHER: PTHR13734:SF1 - PIRSF: PIRSF006288 - SMART: SM00471 - TIGRFAMs: TIGR01693
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2
EC number: =2.7.7.59
Molecular weight: Translated: 101032; Mature: 100900
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFQSPLTFNDEQLTVAQLKSQLDLFANAQKQAFLNHHPVTDLVLSRAEYMDLLLTRLWR CCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH YYGFSEIHNISLVAVGGYGRGELHPLSDIDILVLSKHKLPGELETKLSEFITLLWDLRLE HHCHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH VGHAVRTVEECAAIGREDLTVATNLQEARLLCGSENTFQDLKKVVLSDSFWPSETFYRAK HHHHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHH IQEQRERHARYHDTTYNLEPDIKSTPGGLRDIHTLSWVARRHFGATSLLEMSRYGFLTDA HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCH EYRELVECQDFLWRVRFALHIELKRYDNRLTFAHQIQVAEHLGFKGEGNRGIEMMMKEFY HHHHHHHHHHHHHHHHHHHEEEHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH RTLRRVAELNKMLLKLFDQAIINGGETEPAVIINEDFQRRGRLIEARKPALFQARPETIL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCEECCCCCCHHCCCHHHHH DMFLHIANDSTIDSVSPPTLRQLRTARRRLNKFLHTIPEAREKFMELVRHPNALHRAFSL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH MHKLGVLAAYLPQWSQIVGQMQFDLFHVYTVDEHSVRLLNHINTFSYAKNHDKHPICCEV HHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEHHH YPRLQKKELLLLAAIFHDIGKGRGGDHSEIGEKEAYDFCIEHGLSKPEAKLVSWLVRHHL CCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LMSVTAQRRDIYDPEVITEFAKQVRDEERLEYLVCLTVADICATNPELWNSWKRTLLAEL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH FYSTQRALRRGLENPVDVRERIRHNQQLASALLRKEGFTAREIEVLWQRFKADYFLRHTH HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KQIAWHCEHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVH HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC DAQIMSSKDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQ HHHHCCCCCCEEEHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCEECCCCCCHHH HFKVKTKVDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAED HEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCEEEECCCCCCE LFILTSENGGRLSEEQELQLREKLIHNIAELAP EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AFQSPLTFNDEQLTVAQLKSQLDLFANAQKQAFLNHHPVTDLVLSRAEYMDLLLTRLWR CCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH YYGFSEIHNISLVAVGGYGRGELHPLSDIDILVLSKHKLPGELETKLSEFITLLWDLRLE HHCHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH VGHAVRTVEECAAIGREDLTVATNLQEARLLCGSENTFQDLKKVVLSDSFWPSETFYRAK HHHHHHHHHHHHHCCCCCCEEECCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHH IQEQRERHARYHDTTYNLEPDIKSTPGGLRDIHTLSWVARRHFGATSLLEMSRYGFLTDA HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCH EYRELVECQDFLWRVRFALHIELKRYDNRLTFAHQIQVAEHLGFKGEGNRGIEMMMKEFY HHHHHHHHHHHHHHHHHHHEEEHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH RTLRRVAELNKMLLKLFDQAIINGGETEPAVIINEDFQRRGRLIEARKPALFQARPETIL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHCCCEECCCCCCHHCCCHHHHH DMFLHIANDSTIDSVSPPTLRQLRTARRRLNKFLHTIPEAREKFMELVRHPNALHRAFSL HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH MHKLGVLAAYLPQWSQIVGQMQFDLFHVYTVDEHSVRLLNHINTFSYAKNHDKHPICCEV HHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEHHH YPRLQKKELLLLAAIFHDIGKGRGGDHSEIGEKEAYDFCIEHGLSKPEAKLVSWLVRHHL CCCCCHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LMSVTAQRRDIYDPEVITEFAKQVRDEERLEYLVCLTVADICATNPELWNSWKRTLLAEL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH FYSTQRALRRGLENPVDVRERIRHNQQLASALLRKEGFTAREIEVLWQRFKADYFLRHTH HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH KQIAWHCEHILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVH HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCC DAQIMSSKDGYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQ HHHHCCCCCCEEEHHHHHHHCCCCEECCCCHHHHHHHHHHHHCCCCCCCEECCCCCCHHH HFKVKTKVDFLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAED HEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCCCCCEEEECCCCCCE LFILTSENGGRLSEEQELQLREKLIHNIAELAP EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA