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The map label for this gene is cdaR [H]

Identifier: 27365018

GI number: 27365018

Start: 1628828

End: 1630024

Strand: Reverse

Name: cdaR [H]

Synonym: VV1_1656

Alternate gene names: 27365018

Gene position: 1630024-1628828 (Counterclockwise)

Preceding gene: 27365026

Following gene: 27365017

Centisome position: 49.67

GC content: 45.11

Gene sequence:

>1197_bases
ATGAAACTGAACGAAACTATTGCACGGCAAATTGTCGAACGCACCATGAAGATCATCCCCTATTCGGTCAATGTGATGGA
CGATCAAGGGAGAATTATTGGTTCGGGGGATCCATCGCGACTGCAACAAAAACATGAAGGTGCCGTGCTCGCAATTACGG
AGTGTCGAGTGGTTGAGATCGATAAAGCCACCGCCAGCCATTTAAAAGGGGTTAAGCCTGGGATCAACTTACCAATCCTT
TTTCTAGAACAAGTCATTGGCGTCATTGGCGTATCCGGCGCACCAGACGAAGTGAAGCATTATGGCGAACTGGTTAAGAT
GACCGCAGAGCTCATCGTTGAGCAAGCAGCCCTCATGTCTCAAGTGCAATGGAATAAGCGACACAGGGAAGAGTTGGTTC
TGCAGCTTATCTCTGGCGCGACGCTGAATGACAACCAGTTGAACTCCATTGCAGAGCGACTTGGCTTAAATTTGAGTGAG
CCGAGAATAGCTGCTGTGGTCAAGGTTTTTCCTGATAAACAAACCTCACTCTCGTTGGAGCATTTACAACAGATCGTTCA
CCTACTTGAGTATCCTGAACGTGACAATCTCGTTGGTATTTTATCTGTCTCTAATAACGAGGTGGTGGTGTTAAAACCGA
TAAGCCTAACCGACAACGGTTGGTCCAAAGAGGTGGAAACCAAGCGCATCAACCAGTTGCTAAAGCGGGTAAGTAAAGAA
GGGAACTTCTCAATTAAAATTGCGCTCGGAGACTACTTTGAAGGATTGGCAGGATTAGCCCAATCTTTTGAAACCGCCAA
ACTCACCATGCAATTGATGGCTGAGCAATCTGGCACGGTTTTCTTCTACCAAGATCATAAGCTACCTGTGTTGATGAGCG
ATCTCCTTTCACAACCCTGGAAAGCCGAACAATTGCAGGCTCCATTACTGAAACTGCAAAAAAAAGACAGCAAAGGCGTG
CTACTCAAAACCCTCACCGCGTATTTTGCTCAGAACTGTGATGCATGTCGAACTTGCCAAGCGCTTCATATCCATCGTAA
TACCCTCCGCTATCGAATTGAAAAGATTGAAGATATAACATCATTAAATTTCAATAACTTAAATAACACCTTCCAACTCT
ATATCGCGCTAGAGTTGTTCTCCTCAAAACAAAGAAATTGTGCAGATGCACAAAAAACAAAGCAGTCAGCTGGGTGA

Upstream 100 bases:

>100_bases
TAGGATGTTTTTCTTAAATTCGTAATCCATGTTTTTCTCTATTGATAACGAGATCAGGTACTATTATCGACAAATTCTCA
CTTGGACTCCACTCTCAAGC

Downstream 100 bases:

>100_bases
AATTTGTTGTAACGACTAAAGACCCGATCAGATTCCATCTCTATATTCGAGCAAAAAATACTCTTATCAATAATATGGAA
ATGGAACATGATTGAAGTCT

Product: sugar diacid utilization regulator SdaR

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECRVVEIDKATASHLKGVKPGINLPIL
FLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQLISGATLNDNQLNSIAERLGLNLSE
PRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISLTDNGWSKEVETKRINQLLKRVSKE
GNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLLSQPWKAEQLQAPLLKLQKKDSKGV
LLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIALELFSSKQRNCADAQKTKQSAG

Sequences:

>Translated_398_residues
MKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECRVVEIDKATASHLKGVKPGINLPIL
FLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQLISGATLNDNQLNSIAERLGLNLSE
PRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISLTDNGWSKEVETKRINQLLKRVSKE
GNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLLSQPWKAEQLQAPLLKLQKKDSKGV
LLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIALELFSSKQRNCADAQKTKQSAG
>Mature_398_residues
MKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECRVVEIDKATASHLKGVKPGINLPIL
FLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQLISGATLNDNQLNSIAERLGLNLSE
PRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISLTDNGWSKEVETKRINQLLKRVSKE
GNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLLSQPWKAEQLQAPLLKLQKKDSKGV
LLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIALELFSSKQRNCADAQKTKQSAG

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=382, Percent_Identity=43.979057591623, Blast_Score=313, Evalue=1e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 44581; Mature: 44581

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECRVVEI
CCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEECCCCHHHHHHHHCCCEEEEECEEEEEE
DKATASHLKGVKPGINLPILFLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMS
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QVQWNKRHREELVLQLISGATLNDNQLNSIAERLGLNLSEPRIAAVVKVFPDKQTSLSLE
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCHH
HLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISLTDNGWSKEVETKRINQLLKRVSKE
HHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
GNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLLSQPW
CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC
KAEQLQAPLLKLQKKDSKGVLLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDIT
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SLNFNNLNNTFQLYIALELFSSKQRNCADAQKTKQSAG
CCCCCCCCCEEEEEEEEEHHHCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECRVVEI
CCCHHHHHHHHHHHHHHHCCEEEEEECCCCEEECCCCHHHHHHHHCCCEEEEECEEEEEE
DKATASHLKGVKPGINLPILFLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMS
CHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QVQWNKRHREELVLQLISGATLNDNQLNSIAERLGLNLSEPRIAAVVKVFPDKQTSLSLE
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHEEEEEECCCCCCCCCHH
HLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISLTDNGWSKEVETKRINQLLKRVSKE
HHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCC
GNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLLSQPW
CCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC
KAEQLQAPLLKLQKKDSKGVLLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDIT
CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
SLNFNNLNNTFQLYIALELFSSKQRNCADAQKTKQSAG
CCCCCCCCCEEEEEEEEEHHHCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]