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The map label for this gene is agmR [H]

Identifier: 27364647

GI number: 27364647

Start: 1230103

End: 1230738

Strand: Reverse

Name: agmR [H]

Synonym: VV1_1246

Alternate gene names: 27364647

Gene position: 1230738-1230103 (Counterclockwise)

Preceding gene: 27364648

Following gene: 27364646

Centisome position: 37.5

GC content: 48.74

Gene sequence:

>636_bases
ATGGATTCGACCTACACCATCATCATCGCTGATGATCACCCCCTGTTCCGTAATGCGCTGTTTCAGTCTGTGCATATGGC
GGTCAGTGGGGCCAACTTGCTAGAAGCGGACTCACTCGATGCGTTGCTGAACCTTCTTATACGCGAAGAAGAGCCGGATT
TACTGCTGCTTGACCTCAAAATGCCTGGAGCCAATGGCATGTCAGGTTTGATCCATCTCCGTGCAGAGTATCCCGACCTG
CCCATCGTTGTGGTCTCTGCTAGTGAAGAACCTGCGGTGGTCACACAAGTAAAAAGCCACGGTGCTTTTGGCTTTATTCC
TAAATCGAGTGATATGCGCACACTGGTTTCCGCACTTAACCAAGTTCTCAATGGCGATCCTTATTTCCCTGAAGGATTGA
TCACCAATAACGCCGCCTGTAATGACTTGGCCGAGAAAATCGCCGCGTTAACACCACAGCAATACAAAGTACTGGGGATG
CTTTCCGATGGTTTGCTCAACAAGCAAATTGCTTATGAGCTGAATGTTTCTGAAGCCACCATCAAAGCACATATGACGGC
TATTTTCCGCAAACTTGGGGTGAAAAATCGTACCCAAGCGGTGATCTTGTTACAGCAGCTAGAGCCCGAGCAATAA

Upstream 100 bases:

>100_bases
TAAAAGTCGATTTACATCAGACTTTTAGCGTATAAAGATTGTCCACACTCTTAAAGCTGCAATAATTCCATTAACGAAAT
AGTTAAAAGTGTTTAACGTC

Downstream 100 bases:

>100_bases
CTCAACGCCAAACTCGGTATTCAGAAGTTTTCGTTATATTAGTTCACATTTTAATGACGCAAATTTTTAATACCTTGAGT
AAAATACCTCGGCAGCCAAA

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MDSTYTIIIADDHPLFRNALFQSVHMAVSGANLLEADSLDALLNLLIREEEPDLLLLDLKMPGANGMSGLIHLRAEYPDL
PIVVVSASEEPAVVTQVKSHGAFGFIPKSSDMRTLVSALNQVLNGDPYFPEGLITNNAACNDLAEKIAALTPQQYKVLGM
LSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQLEPEQ

Sequences:

>Translated_211_residues
MDSTYTIIIADDHPLFRNALFQSVHMAVSGANLLEADSLDALLNLLIREEEPDLLLLDLKMPGANGMSGLIHLRAEYPDL
PIVVVSASEEPAVVTQVKSHGAFGFIPKSSDMRTLVSALNQVLNGDPYFPEGLITNNAACNDLAEKIAALTPQQYKVLGM
LSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQLEPEQ
>Mature_211_residues
MDSTYTIIIADDHPLFRNALFQSVHMAVSGANLLEADSLDALLNLLIREEEPDLLLLDLKMPGANGMSGLIHLRAEYPDL
PIVVVSASEEPAVVTQVKSHGAFGFIPKSSDMRTLVSALNQVLNGDPYFPEGLITNNAACNDLAEKIAALTPQQYKVLGM
LSDGLLNKQIAYELNVSEATIKAHMTAIFRKLGVKNRTQAVILLQQLEPEQ

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=210, Percent_Identity=31.4285714285714, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1786747, Length=192, Percent_Identity=26.5625, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1789937, Length=199, Percent_Identity=26.6331658291457, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787473, Length=209, Percent_Identity=33.9712918660287, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1788712, Length=198, Percent_Identity=26.7676767676768, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788546, Length=204, Percent_Identity=30.3921568627451, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788222, Length=192, Percent_Identity=23.4375, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1787277, Length=102, Percent_Identity=36.2745098039216, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790102, Length=198, Percent_Identity=27.7777777777778, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23007; Mature: 23007

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSTYTIIIADDHPLFRNALFQSVHMAVSGANLLEADSLDALLNLLIREEEPDLLLLDLK
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE
MPGANGMSGLIHLRAEYPDLPIVVVSASEEPAVVTQVKSHGAFGFIPKSSDMRTLVSALN
CCCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEHHCCCCEEECCCCCCHHHHHHHHH
QVLNGDPYFPEGLITNNAACNDLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEAT
HHHCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEEHHCCCCCCEEEEEECCCHHH
IKAHMTAIFRKLGVKNRTQAVILLQQLEPEQ
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure
MDSTYTIIIADDHPLFRNALFQSVHMAVSGANLLEADSLDALLNLLIREEEPDLLLLDLK
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEE
MPGANGMSGLIHLRAEYPDLPIVVVSASEEPAVVTQVKSHGAFGFIPKSSDMRTLVSALN
CCCCCCCCEEEEEEECCCCCCEEEEECCCCCEEEEEHHCCCCEEECCCCCCHHHHHHHHH
QVLNGDPYFPEGLITNNAACNDLAEKIAALTPQQYKVLGMLSDGLLNKQIAYELNVSEAT
HHHCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCEEEEEEHHCCCCCCEEEEEECCCHHH
IKAHMTAIFRKLGVKNRTQAVILLQQLEPEQ
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]