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The map label for this gene is yfjD [C]

Identifier: 27364626

GI number: 27364626

Start: 1202554

End: 1203642

Strand: Reverse

Name: yfjD [C]

Synonym: VV1_1223

Alternate gene names: 27364626

Gene position: 1203642-1202554 (Counterclockwise)

Preceding gene: 27364629

Following gene: 27364624

Centisome position: 36.68

GC content: 50.51

Gene sequence:

>1089_bases
ATGCTACTGCTTACTATCTATATTTCGATTGCTATTGGTGTTTCCTTTATTTGTTCGGTGCTAGAAGCCGTCTTGCTCAG
CATCAGTCCGAGTTACATCGCCCAGCTCAGACAACAAGGGCACCCAGCTGCGGCACAACTGACGAAACTCAAAGCGGATA
TCGATCGCCCACTGGCTTCCATCCTGACGCTGAACACCATCGCTCACACCATTGGTGCTGCGACAGCGGGTGCGCAAGCG
GCAGTGGTTTTCGGCAGCGAATGGTTGGGGGTATTCTCTGGTGTCCTAACGCTCGGTATTCTTGTGCTTTCGGAAATCGT
CCCTAAAACCATTGGAGCCACTTACTGGCGACAACTGGCGCCTTCAGCCGCCAGCACCTTGCGTTGGATGGTCTGGGCCC
TAACACCCTTTGTCTGGTTCTCTGAGCAAATCACCAAGCGTCTTGCTCGCAATCAAGAAACCCCAAAAATGCGCGATGAG
CTGTCAGCCATGGCGATTTTGGCGCGTGAAAGCGGCGAGTTTGCCGAGGGTGAGTCTAAAATTCTGAGTAACTTGCTCGG
CATTCAAGATGTGCCAGTAACACAGGTGATGACGCCTCGACCCGTGGTCTTTCGCGTTGAAGCAACCATGACCATCAACG
AATTTTTGGCACAACACAAGGAAACGCCTTTCTCACGCCCACTGGTTTACAGCGAGCAGAAAGACAACATCATTGGTTTT
GTCCACCGCTTAGAGCTATTCAAACTGCAGCAATCTGGGGCAGGAGAGAAACAACTGGGTTCCGTGATGCGCCCTATTCA
CGTCATCATGAACACGCTTGCTTTGCCTAAAGCGTTTGATCAAATGATGGCAAAACGCTTGCAACTTTCTATCGTGGTTG
ACGAGTATGGCACCGTGCTCGGCCTCGTCACCTTAGAAGATATTTTTGAATATCTACTCGGGGAAGAGATCATCGACGAA
GCTGACAAGAGCCAAGACATGCAAGAACTGGCTTACCAACGTTGGGAACGCTGGAAAAACAAGCATGGTATGATTGAAAG
CCGCGACGACGATGAAGATGAAGGAAGTAACGACAAAACGAAGTCGTAG

Upstream 100 bases:

>100_bases
ATTTCAGCCTCAAAGCACCTATTTATAAGGGGCTGCCATACTCCTATAATACGATTTACCTCACGGCAGATGTGATTGAG
GGATTTCTTCAAGGGCAACT

Downstream 100 bases:

>100_bases
CTTACTCAAGTGTCAAAACAACAAAAGGCTCCATTGGAGCCTTTTGTTTATCATTACGACAGAGTGATGCCCAAGTTGCT
GATCGGATCATCTCTCAACT

Product: Hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MLLLTIYISIAIGVSFICSVLEAVLLSISPSYIAQLRQQGHPAAAQLTKLKADIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSEWLGVFSGVLTLGILVLSEIVPKTIGATYWRQLAPSAASTLRWMVWALTPFVWFSEQITKRLARNQETPKMRDE
LSAMAILARESGEFAEGESKILSNLLGIQDVPVTQVMTPRPVVFRVEATMTINEFLAQHKETPFSRPLVYSEQKDNIIGF
VHRLELFKLQQSGAGEKQLGSVMRPIHVIMNTLALPKAFDQMMAKRLQLSIVVDEYGTVLGLVTLEDIFEYLLGEEIIDE
ADKSQDMQELAYQRWERWKNKHGMIESRDDDEDEGSNDKTKS

Sequences:

>Translated_362_residues
MLLLTIYISIAIGVSFICSVLEAVLLSISPSYIAQLRQQGHPAAAQLTKLKADIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSEWLGVFSGVLTLGILVLSEIVPKTIGATYWRQLAPSAASTLRWMVWALTPFVWFSEQITKRLARNQETPKMRDE
LSAMAILARESGEFAEGESKILSNLLGIQDVPVTQVMTPRPVVFRVEATMTINEFLAQHKETPFSRPLVYSEQKDNIIGF
VHRLELFKLQQSGAGEKQLGSVMRPIHVIMNTLALPKAFDQMMAKRLQLSIVVDEYGTVLGLVTLEDIFEYLLGEEIIDE
ADKSQDMQELAYQRWERWKNKHGMIESRDDDEDEGSNDKTKS
>Mature_362_residues
MLLLTIYISIAIGVSFICSVLEAVLLSISPSYIAQLRQQGHPAAAQLTKLKADIDRPLASILTLNTIAHTIGAATAGAQA
AVVFGSEWLGVFSGVLTLGILVLSEIVPKTIGATYWRQLAPSAASTLRWMVWALTPFVWFSEQITKRLARNQETPKMRDE
LSAMAILARESGEFAEGESKILSNLLGIQDVPVTQVMTPRPVVFRVEATMTINEFLAQHKETPFSRPLVYSEQKDNIIGF
VHRLELFKLQQSGAGEKQLGSVMRPIHVIMNTLALPKAFDQMMAKRLQLSIVVDEYGTVLGLVTLEDIFEYLLGEEIIDE
ADKSQDMQELAYQRWERWKNKHGMIESRDDDEDEGSNDKTKS

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=339, Percent_Identity=24.4837758112094, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI40068055, Length=341, Percent_Identity=23.4604105571848, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI40068053, Length=341, Percent_Identity=23.4604105571848, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI145693175, Length=306, Percent_Identity=23.5294117647059, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786879, Length=163, Percent_Identity=33.1288343558282, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1790664, Length=238, Percent_Identity=27.3109243697479, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87082033, Length=231, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 40306; Mature: 40306

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLLTIYISIAIGVSFICSVLEAVLLSISPSYIAQLRQQGHPAAAQLTKLKADIDRPLAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ILTLNTIAHTIGAATAGAQAAVVFGSEWLGVFSGVLTLGILVLSEIVPKTIGATYWRQLA
HHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSAASTLRWMVWALTPFVWFSEQITKRLARNQETPKMRDELSAMAILARESGEFAEGESK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
ILSNLLGIQDVPVTQVMTPRPVVFRVEATMTINEFLAQHKETPFSRPLVYSEQKDNIIGF
HHHHHHCCCCCCHHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
VHRLELFKLQQSGAGEKQLGSVMRPIHVIMNTLALPKAFDQMMAKRLQLSIVVDEYGTVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHH
GLVTLEDIFEYLLGEEIIDEADKSQDMQELAYQRWERWKNKHGMIESRDDDEDEGSNDKT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
KS
CC
>Mature Secondary Structure
MLLLTIYISIAIGVSFICSVLEAVLLSISPSYIAQLRQQGHPAAAQLTKLKADIDRPLAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ILTLNTIAHTIGAATAGAQAAVVFGSEWLGVFSGVLTLGILVLSEIVPKTIGATYWRQLA
HHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PSAASTLRWMVWALTPFVWFSEQITKRLARNQETPKMRDELSAMAILARESGEFAEGESK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHH
ILSNLLGIQDVPVTQVMTPRPVVFRVEATMTINEFLAQHKETPFSRPLVYSEQKDNIIGF
HHHHHHCCCCCCHHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
VHRLELFKLQQSGAGEKQLGSVMRPIHVIMNTLALPKAFDQMMAKRLQLSIVVDEYGTVL
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHH
GLVTLEDIFEYLLGEEIIDEADKSQDMQELAYQRWERWKNKHGMIESRDDDEDEGSNDKT
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
KS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]