Click here to switch to the map view.

The map label for this gene is 27364623

Identifier: 27364623

GI number: 27364623

Start: 1200320

End: 1200913

Strand: Reverse

Name: 27364623

Synonym: VV1_1220

Alternate gene names: NA

Gene position: 1200913-1200320 (Counterclockwise)

Preceding gene: 27364624

Following gene: 27364618

Centisome position: 36.59

GC content: 48.99

Gene sequence:

>594_bases
ATGCCACTTGAGCCGCTGTTAACTCAAATCCGGGCTTGCCAAGTGTGTGCCTCCGCCTTGCCGCTAGGTGCTAACCCTGT
GGTTCAAGCTCACTCAGAGGCGAAAATTTTGATCATCGGACAAGCGCCAGGCACCAAAGTCCACCACACTTCCATTCCGT
GGAATGATGCCAGTGGTAATCGCTTAAGAGTGTGGTTAGACATTGAAAAGCCGACTTTTTATGACCCAAAACAGATCGCC
ATCATGCCGATGGGATTTTGCTATCCCGGACGAGGGCAATCTGGCGATCTTCCGCCACGAAAAGAGTGCGCACCACTGTG
GCATGAGGCCTTACTGAAACACTTACCCAATATCGAACTGACACTGTTGATTGGTCAATATGCACAAAACCGTTATCTGT
CGAACAAACCAAAAACACTGACTGAAACGGTACAAAATTGGCAAGCTTGGCTACCCGATTACCTGCCACTTCCTCATCCC
TCGCCAAGAAATACACTGTGGTTGAGAAAGAATCCTTGGTTTGAAGAACAAACCGTGCCCTACCTTCGCCAACAAGTGCA
TCAGCTACTTTCCCCGAGCAAGGTTGAGATCTAA

Upstream 100 bases:

>100_bases
TCCTGAGAAAGTGATGGCGCTGTTTGCAGAAAATTACCATCGTTGGCTTGAAGGGTACCCGCTCAACCATCAAGTCAGCT
TCACCAAAGGGTATTGATGC

Downstream 100 bases:

>100_bases
AAAGCATTGAGATCATGGCAACCCAAAAGCACCTTTCGCTGTACACCGCTGAGGTAGAACCGACAAACAAAAAACCAGCC
GAAGCTGGTTTTTAATGGCT

Product: Uracil-DNA glycosylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MPLEPLLTQIRACQVCASALPLGANPVVQAHSEAKILIIGQAPGTKVHHTSIPWNDASGNRLRVWLDIEKPTFYDPKQIA
IMPMGFCYPGRGQSGDLPPRKECAPLWHEALLKHLPNIELTLLIGQYAQNRYLSNKPKTLTETVQNWQAWLPDYLPLPHP
SPRNTLWLRKNPWFEEQTVPYLRQQVHQLLSPSKVEI

Sequences:

>Translated_197_residues
MPLEPLLTQIRACQVCASALPLGANPVVQAHSEAKILIIGQAPGTKVHHTSIPWNDASGNRLRVWLDIEKPTFYDPKQIA
IMPMGFCYPGRGQSGDLPPRKECAPLWHEALLKHLPNIELTLLIGQYAQNRYLSNKPKTLTETVQNWQAWLPDYLPLPHP
SPRNTLWLRKNPWFEEQTVPYLRQQVHQLLSPSKVEI
>Mature_196_residues
PLEPLLTQIRACQVCASALPLGANPVVQAHSEAKILIIGQAPGTKVHHTSIPWNDASGNRLRVWLDIEKPTFYDPKQIAI
MPMGFCYPGRGQSGDLPPRKECAPLWHEALLKHLPNIELTLLIGQYAQNRYLSNKPKTLTETVQNWQAWLPDYLPLPHPS
PRNTLWLRKNPWFEEQTVPYLRQQVHQLLSPSKVEI

Specific function: Unknown

COG id: COG1573

COG function: function code L; Uracil-DNA glycosylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005122 [H]

Pfam domain/function: PF03167 UDG [H]

EC number: NA

Molecular weight: Translated: 22428; Mature: 22297

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLEPLLTQIRACQVCASALPLGANPVVQAHSEAKILIIGQAPGTKVHHTSIPWNDASGN
CCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCC
RLRVWLDIEKPTFYDPKQIAIMPMGFCYPGRGQSGDLPPRKECAPLWHEALLKHLPNIEL
EEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
TLLIGQYAQNRYLSNKPKTLTETVQNWQAWLPDYLPLPHPSPRNTLWLRKNPWFEEQTVP
EEEECHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
YLRQQVHQLLSPSKVEI
HHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PLEPLLTQIRACQVCASALPLGANPVVQAHSEAKILIIGQAPGTKVHHTSIPWNDASGN
CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCEEEECCCCCCCCCCC
RLRVWLDIEKPTFYDPKQIAIMPMGFCYPGRGQSGDLPPRKECAPLWHEALLKHLPNIEL
EEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
TLLIGQYAQNRYLSNKPKTLTETVQNWQAWLPDYLPLPHPSPRNTLWLRKNPWFEEQTVP
EEEECHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCH
YLRQQVHQLLSPSKVEI
HHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]