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The map label for this gene is 27364592

Identifier: 27364592

GI number: 27364592

Start: 1169301

End: 1169747

Strand: Reverse

Name: 27364592

Synonym: VV1_1176

Alternate gene names: NA

Gene position: 1169747-1169301 (Counterclockwise)

Preceding gene: 27364599

Following gene: 27364588

Centisome position: 35.64

GC content: 40.72

Gene sequence:

>447_bases
ATGACGTTTAAAAAAGTTATTGCGAGTGCCGCTCTGGCCATTTTGGGTGGTTTCATTTTCTCGCAGCTCGATATTTATCC
TGCCATCAGTTTTGTTATTGGTGTTGTACTTACAACTTTACTTCTCTCTTTTTTTCCACACACGCCAACTCTTACTGATA
GTGACTCTTCGCTTCCAACCAAAACACTTTATGTGGGTAACCTTCCCTATAAAGCGAATGAAACTCATGTTCGCGAACTG
TTTGCACAACACGGCCAAGTTTATGGTGTACGTTTGATGAAAGATAAGCGTACGGGTAAAAGAAGAGGCTTTGGGTTTGT
GGTGATGGCCAGTGGAGATGCTGAAAATGCTATCAATGCACTTAATGAAAAGGAGTATGCGCAACGTACATTGAAAGTTC
GCATTGCAAATGAAATGAAACACCCTATAGAGGATAAAGTTCTATAG

Upstream 100 bases:

>100_bases
CCATTACGTTGGAAAAAGACTAAGCATAAACTTAAGATTTGTGTGTCTATTTTGTTAATAGGCATTCATTTTTGTCTGTA
CCCTAATGTAGTAATCCAAT

Downstream 100 bases:

>100_bases
CGTTAAACCCCATCGTTTTTAGTGACCCATTCAGCGCAGCTTCATCCCAAGGCTGCGCTGTGCTAAAGATGCGCCACGGT
GTCTTGGTACTTTGTGGTGA

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MTFKKVIASAALAILGGFIFSQLDIYPAISFVIGVVLTTLLLSFFPHTPTLTDSDSSLPTKTLYVGNLPYKANETHVREL
FAQHGQVYGVRLMKDKRTGKRRGFGFVVMASGDAENAINALNEKEYAQRTLKVRIANEMKHPIEDKVL

Sequences:

>Translated_148_residues
MTFKKVIASAALAILGGFIFSQLDIYPAISFVIGVVLTTLLLSFFPHTPTLTDSDSSLPTKTLYVGNLPYKANETHVREL
FAQHGQVYGVRLMKDKRTGKRRGFGFVVMASGDAENAINALNEKEYAQRTLKVRIANEMKHPIEDKVL
>Mature_147_residues
TFKKVIASAALAILGGFIFSQLDIYPAISFVIGVVLTTLLLSFFPHTPTLTDSDSSLPTKTLYVGNLPYKANETHVRELF
AQHGQVYGVRLMKDKRTGKRRGFGFVVMASGDAENAINALNEKEYAQRTLKVRIANEMKHPIEDKVL

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=37.6623376623377, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16431; Mature: 16300

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFKKVIASAALAILGGFIFSQLDIYPAISFVIGVVLTTLLLSFFPHTPTLTDSDSSLPT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KTLYVGNLPYKANETHVRELFAQHGQVYGVRLMKDKRTGKRRGFGFVVMASGDAENAINA
EEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHH
LNEKEYAQRTLKVRIANEMKHPIEDKVL
HHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TFKKVIASAALAILGGFIFSQLDIYPAISFVIGVVLTTLLLSFFPHTPTLTDSDSSLPT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
KTLYVGNLPYKANETHVRELFAQHGQVYGVRLMKDKRTGKRRGFGFVVMASGDAENAINA
EEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEEECCCHHHHHHH
LNEKEYAQRTLKVRIANEMKHPIEDKVL
HHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA