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The map label for this gene is asnC [H]

Identifier: 27364531

GI number: 27364531

Start: 1109647

End: 1110111

Strand: Reverse

Name: asnC [H]

Synonym: VV1_1109

Alternate gene names: 27364531

Gene position: 1110111-1109647 (Counterclockwise)

Preceding gene: 27364535

Following gene: 27364529

Centisome position: 33.83

GC content: 48.82

Gene sequence:

>465_bases
ATGCATTCAGCCAATGCCAAGATTGATGATTTGGATCGCGCTATATTGAAAACGCTGATGGCGGACGCGAAAACGCCTTA
TGCAGAGATGGCTAAACAGTTCAACGTCAGTCCTGCCACCATTCACGTGCGCATCGAAAAGATGAAAGCGGCGGAGATCA
TTGAAGGTACCGAAGTAGTGGTCAACACCAAAAAACTCGGCTACGACGTGTGCTGTTTTATCGGCATCAACCTCAATGCG
GCGCGCGACTATCATTCCGCGCTGGAAAAACTCAACGCATTGGATGAAGTGGTGGAAGCGTATTACACCACGGGCGCGTA
CAACATCTTCGTCAAGTTGATGTGTAAGTCGATTGAAGAACTGCAATTTGTGCTGATCGACAAACTGCAAGCGATCGACG
AAGTGCAATCGACCGAAACGCTGATTTCGCTGCAAAACCCGATCAATCGCAACGTCAACCCTTAG

Upstream 100 bases:

>100_bases
CTTCCTCTCATTCCGCCTATGAGCAAAAAACCTTGATTGTGAAAGATAAGCTGCCCTTGTTAGTATTATACCCATATGCT
GATTAGAAAAGGGACAGACA

Downstream 100 bases:

>100_bases
CTCGCAACAAACTTAGCGTACCGCAAAAAACAAGGCCAGCCGTTAGGCTGACCTTGTGATGCTTAGTTTGCTTCATCGAG
TTAAGCCGCAATACCGGAAT

Product: DNA-binding transcriptional regulator AsnC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MHSANAKIDDLDRAILKTLMADAKTPYAEMAKQFNVSPATIHVRIEKMKAAEIIEGTEVVVNTKKLGYDVCCFIGINLNA
ARDYHSALEKLNALDEVVEAYYTTGAYNIFVKLMCKSIEELQFVLIDKLQAIDEVQSTETLISLQNPINRNVNP

Sequences:

>Translated_154_residues
MHSANAKIDDLDRAILKTLMADAKTPYAEMAKQFNVSPATIHVRIEKMKAAEIIEGTEVVVNTKKLGYDVCCFIGINLNA
ARDYHSALEKLNALDEVVEAYYTTGAYNIFVKLMCKSIEELQFVLIDKLQAIDEVQSTETLISLQNPINRNVNP
>Mature_154_residues
MHSANAKIDDLDRAILKTLMADAKTPYAEMAKQFNVSPATIHVRIEKMKAAEIIEGTEVVVNTKKLGYDVCCFIGINLNA
ARDYHSALEKLNALDEVVEAYYTTGAYNIFVKLMCKSIEELQFVLIDKLQAIDEVQSTETLISLQNPINRNVNP

Specific function: Activator of asnA transcription; autogenous regulator of its own transcription; and repressor of the expression of gidA at a post-transcriptional level [H]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=150, Percent_Identity=66, Blast_Score=210, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17222; Mature: 17222

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSANAKIDDLDRAILKTLMADAKTPYAEMAKQFNVSPATIHVRIEKMKAAEIIEGTEVV
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEEHHHHHHHHCCCCEE
VNTKKLGYDVCCFIGINLNAARDYHSALEKLNALDEVVEAYYTTGAYNIFVKLMCKSIEE
EEHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LQFVLIDKLQAIDEVQSTETLISLQNPINRNVNP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MHSANAKIDDLDRAILKTLMADAKTPYAEMAKQFNVSPATIHVRIEKMKAAEIIEGTEVV
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCEEEEEEEEHHHHHHHHCCCCEE
VNTKKLGYDVCCFIGINLNAARDYHSALEKLNALDEVVEAYYTTGAYNIFVKLMCKSIEE
EEHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
LQFVLIDKLQAIDEVQSTETLISLQNPINRNVNP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]