Click here to switch to the map view.

The map label for this gene is yqiC [H]

Identifier: 27364501

GI number: 27364501

Start: 1070179

End: 1070430

Strand: Reverse

Name: yqiC [H]

Synonym: VV1_1078

Alternate gene names: 27364501

Gene position: 1070430-1070179 (Counterclockwise)

Preceding gene: 27364502

Following gene: 27364499

Centisome position: 32.62

GC content: 43.25

Gene sequence:

>252_bases
ATGTTTGACCCAAAGAAAATTGAGCAGATTGCAAAACAAATTCACGACTCTATGCCACAACCCGTTAAGGATTTAGGTGC
GGATGTGGATCAAAAAATCCGTCAAGTCATTCAAGGCCAACTCAACAAGCTTGATGTGGTTAGCCGTGAAGAGTTTGATG
TGCAAACGCAAGTCTTGCTGCGCACTCGTCAAAAGCTCAGTGAGATGGAAAAGAAACTGTCAGAGCTTGAAGCAAAGCTC
GCTGATAAGTAA

Upstream 100 bases:

>100_bases
TACTTTTCACACTACATCTGTGTCGCTTTTTTACGCCAGAGATAGCGACTTTCACCAGTCAATTACATAGAATACCAACA
AAGAAATCAGGAGCTACCTC

Downstream 100 bases:

>100_bases
TCCCCAAACGCGACAGTTAGGGCGTTTTTCTTCGTTCTAAAGCAGCGATAAGCGAATAAACAAAAGGCTTGGTCAGAGAC
CAAGCCTTTTAATTACATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MFDPKKIEQIAKQIHDSMPQPVKDLGADVDQKIRQVIQGQLNKLDVVSREEFDVQTQVLLRTRQKLSEMEKKLSELEAKL
ADK

Sequences:

>Translated_83_residues
MFDPKKIEQIAKQIHDSMPQPVKDLGADVDQKIRQVIQGQLNKLDVVSREEFDVQTQVLLRTRQKLSEMEKKLSELEAKL
ADK
>Mature_83_residues
MFDPKKIEQIAKQIHDSMPQPVKDLGADVDQKIRQVIQGQLNKLDVVSREEFDVQTQVLLRTRQKLSEMEKKLSELEAKL
ADK

Specific function: Unknown

COG id: COG2960

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082201, Length=79, Percent_Identity=64.5569620253165, Blast_Score=112, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007475 [H]

Pfam domain/function: PF04380 DUF526 [H]

EC number: NA

Molecular weight: Translated: 9616; Mature: 9616

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDPKKIEQIAKQIHDSMPQPVKDLGADVDQKIRQVIQGQLNKLDVVSREEFDVQTQVLL
CCCHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTRQKLSEMEKKLSELEAKLADK
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFDPKKIEQIAKQIHDSMPQPVKDLGADVDQKIRQVIQGQLNKLDVVSREEFDVQTQVLL
CCCHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTRQKLSEMEKKLSELEAKLADK
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9868784 [H]